Array 1 589827-589408 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXMC01000001.1 Listeria monocytogenes strain PNUSAL000442 DYZ90_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 589826 29 100.0 37 ............................. TTTATTTCTCCTACGCTTTTCTTATTTCTGTAAATAA 589760 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 589697 29 96.6 35 ........................C.... CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 589633 29 96.6 36 A............................ CAACTTGAAACCTAGTCTGATAACATAATCAACAAT 589568 29 100.0 37 ............................. TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 589502 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [589478] 589436 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 92.6 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTTATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAATGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTTGGGAAATCTTCAGGATAAGGCGAGGTTTTAGATGTTTTTTGGTAGGTCGACAGAAAGGGGCGTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGAG # Right flank : GAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGAAAGGTAAGCTGAATAATACCTATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATTAGCGAGATAGAAATTT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.14%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 7024-4810 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXMC01000002.1 Listeria monocytogenes strain PNUSAL000442 DYZ90_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7023 36 100.0 30 .................................... GAGTTCGACCAAACTAACACAACCTTTATG 6957 36 100.0 30 .................................... GTAGATATTACGTATTGAGTGCGCGCTCAG 6891 36 100.0 30 .................................... TCTTTAGGATATCTCAATGTACGAAATGAT 6825 36 100.0 30 .................................... CTAACTGGTCACGAATGGAACGTTCAGCAT 6759 36 100.0 30 .................................... AAATGGTATAAACCGGGAACAAAGTTAGCA 6693 36 100.0 30 .................................... CAAATCTTCTACACATTCAATAACGATGTC 6627 36 100.0 30 .................................... GCGTTCTGTTGTGTCTGATAATAAGTGTCA 6561 36 100.0 30 .................................... AAAACATGTCAGTAGAACATCAGCGTTTTG 6495 36 100.0 30 .................................... TCAGAGATAAAAGAAATGGACGAACGATAT 6429 36 100.0 30 .................................... TTACTAATATTCCCTGCACTGCCACCACCT 6363 36 100.0 30 .................................... AATGGATATTAAATCATTTTGTATATAAGA 6297 36 100.0 30 .................................... TTGCTACTATAGATTTGTAGTATTCTGTCC 6231 36 100.0 30 .................................... CCGAGTGGCAATCCAGGCGCCCAGCTTATG 6165 36 100.0 30 .................................... CCGTTCATTATCAACGGGGAAGGTGATTGT 6099 36 100.0 30 .................................... TGTTTCCAGGGGCGTTCGAAGAGATATTGC 6033 36 100.0 30 .................................... AAAGTCTCATGAAGGAGGGAGGGTTAAAAG 5967 36 100.0 30 .................................... TTGAGTCTGTGCTTAATAGATTGAATGACG 5901 36 100.0 30 .................................... CCGACCAAAAGCGTTTCTGTAGCTCCTGTG 5835 36 100.0 30 .................................... CTTCAACATTAGAAACGGGCTGTCAGCAAG 5769 36 100.0 30 .................................... AGTTATTTTACAAAAGATGTTAGTTAATAT 5703 36 100.0 30 .................................... AATTAAGAGAGGAATTACTACTCACCCAAG 5637 36 100.0 30 .................................... CAGTGGATGGTGAAGCATGACAATAAAAGT 5571 36 100.0 30 .................................... TGAAGATAATCGGTATAAACAAGACGAATC 5505 36 100.0 30 .................................... TTAATATGTTTTAAGTGTTTACTCACAGCT 5439 36 100.0 30 .................................... TATGCCGTTGAGATAAAACAATTCATTCAA 5373 36 100.0 30 .................................... TTGCCCAATAAAATCCTGCCGTTGAGCGTT 5307 36 100.0 30 .................................... TTTTTCCCTCCTCAATCGAGAACGAACACA 5241 36 100.0 30 .................................... TTCTCATCTATAATCTTATAATATAGCAGG 5175 36 97.2 30 ......A............................. AAGAGTACCTTTGTGAAGTTGCCGCTTCTC 5109 36 100.0 30 .................................... AATTGTCCGAGGGGATTCGAACCAAAAGCT 5043 36 100.0 30 .................................... AATCTCGTTGAGTCCCCTGTAAAATACCAT 4977 36 100.0 30 .................................... TAAATCTTTCGTTTCTTTTGCACCCCGATT 4911 36 100.0 30 .................................... TAGGCTTATTTTTTTATGGCGCAGTGGACA 4845 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATCTATCTAAGAAGAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACGGAGGAAGAACTGCTAGAGTTGAGGCGGTATATCTCTTTATATCAAGTCAAAGTTCTATTTATTGAACCTAGAAAGATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTGGAAAATAGTGTATAAGGTAACCGTTGCTCTTTGAAAATAAAATAAATTTTATGTAAACCATAAAGTAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAATTCTGCGAG # Right flank : TAATATTCTCCCCCCATGAAAAAAACCTCAATCATTTTTATTTTTTGCGCACTCCTGCTAACCGCCTGCTCAACCGCTACAAAAGAAATCCCTAGACAAACCACGGAAGCTACCGGCACAATTGAACAAGTAGAAACGGAATCAGTTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCACGACGAAATGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATCCAAGAAACTTCACCAGCCTAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAATTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTCAAAAAAATAAACTCAAATTCCTTGCCTTGGTGTGAACTCCAGGGTTTATAATTCTATATGTAAAGAACGAAACGAGGTGATGGAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //