Array 1 4698-5759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKB010000210.1 Saccharopolyspora sp. 6V contig_00210, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 4698 37 100.0 37 ..................................... CTCGCCGCGTTCGGCCTCGGGCACCTCCAGCGCCCCG 4772 37 100.0 36 ..................................... TCGGGCGCAGTGAGCCCCGCTGATGCCCAGGCGCTT 4845 37 100.0 37 ..................................... CTCGCCGCGTTCGGCCTCGGGCACCTCCAGCGCCCCG 4919 37 100.0 39 ..................................... CCTCGGGTCGGGCTCCCGCGTGCCTCACGGAAGCTCTCA 4995 37 100.0 36 ..................................... CCCGCCGGTGATGATCGTGATGGGTGTGCTGTAGGC 5068 37 100.0 35 ..................................... GAGTTCGACAACGCGCCGAACGCGGCGGCGTGGTT 5140 37 100.0 37 ..................................... TCCCAGGTTTTCGGCATCCTCGGCGGCGTCCTGCAAG 5214 37 100.0 35 ..................................... TCGGGCAGGAGGCGAGCATGGGTGCGGGCGTAGGC 5286 37 100.0 35 ..................................... CGCGCCGACACCGATGATGTGGCGGCCGAACTCCC 5358 37 100.0 35 ..................................... CCCGCCGCCGCCCCGCGGCGCCGGCACCGCACCGC 5430 37 100.0 36 ..................................... ATCGACGGCCGCTTCGCCCCGGTCGCCGCAGCCACC 5503 37 100.0 36 ..................................... TCCGGCTTCGGCAGGTTCATCAGCGCCTGCTCCTTC 5576 37 100.0 37 ..................................... GTCAGAGTCACCGGCGGGCAGAGCCCGCACCCTCGAA 5650 37 100.0 36 ..................................... TCGTCGTCGGTGACGGCGTACGAGGTGTAGATCTCG 5723 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 15 37 100.0 36 GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Left flank : TCGGTGTTCTTGCGACGCACGGCGACGACCAAGGCAGCAGCCTGCGGAAGAACGTCGCGCACGAGCTGGGACACCTCCAGCATCCGCAGCCGGTAGAGCTGGTCGGCGGCGTGCTCGGCGGTCTCGTCCGCACGAGCGATCCGCTGCGCCAAGTACCGCGAAGGAACAACCGACAACATGACCTCACCTGCCCTTTCTTGTGGAGTGGTCCGTTCGCGCAGCTTGGTTTCGACGCAGTGCCGGACTCTGGGGAGTGGGGCCAGCGACTGAAGTCCTGCCGACCACGACCCGCTTCTATGAACCAACCGGGGTGGCTGGTGAGTCGGTTATGAAGAGGAGCGGCCTGGAGGCTGGATGTCGGTGACGTCCGATGTATGTTCGGTTCGGAGCCGGTAGCGTGGTGCGACACGCCTAGGGGATCTGAAGTGAATTCCGGGCGTGTCGGTCACAGCCGGATAAAGTAATCCCGTCGAGCGGGCTGTTCTGCCTGATCGACAAGG # Right flank : CCGGACGGGCGGGCACCCCCCCCCCCCCCCCCCGCCCCGCCCCGCCGCCCCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.20,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 1 10839-9333 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKB010000200.1 Saccharopolyspora sp. 6V contig_00200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 10838 37 100.0 36 ..................................... GAAGACCTCGATGAGGTCGTCGCCTTGGGAGAGCTC 10765 37 100.0 36 ..................................... CACCTCGATGTCCTCGATATCCCCGAGACCGCTGAC 10692 37 100.0 35 ..................................... CACCACGGCCTGGTCGGCCCGCCCGGCGCGCACCT 10620 37 100.0 36 ..................................... GGGACCGGGAGTATCGAGCCGGTGCGGGTGCTGCTG 10547 37 100.0 37 ..................................... TCCACCACCCCCGCCAGCACCGGGCGCCCACGCAGCA 10473 37 100.0 36 ..................................... GAGCAGGCCGACGTAGACGGCGAACGCGATGGCGAG 10400 37 100.0 37 ..................................... CCGGACGGCCTGCTCCCGGCGCAGGACCTTGGCGCGT 10326 37 100.0 36 ..................................... AAGCACAGGACCACAACTTGCCTGGACGTCGAGCAC 10253 37 100.0 37 ..................................... CCTGACGCGTGGACCCTCGCGTTCGCCGCCGACGGCT 10179 37 100.0 37 ..................................... ATCTCGTCTTCCTCAGAACAGACCCCGCTGCCCAGCA 10105 37 100.0 36 ..................................... CTCGCCGAACGCACGGAACGGTGCGACAAGCCGCTC 10032 37 100.0 38 ..................................... GTGCAGCAGGCGCTGCTCGATGCGCCATTGCAGCACCG 9957 37 100.0 37 ..................................... CCAGATCACGTCGCCGTCGGAGTCGACCCGGCACGGG 9883 37 100.0 36 ..................................... CACGCCAGGCGTTCGGCGATGAGCGGCTCCAGCACG 9810 37 97.3 35 ..............T...................... CACACCAACGACGCCGACACCCGCCTGGTCCTCAC 9738 37 100.0 37 ..................................... TCCGGCGTGGTAGGGCTGGTTCGCGCGGGCGTTGAGG 9664 37 100.0 36 ..................................... GACCTCGACGACCCCGAGTTCGAGGAGCGCGTCACC 9591 37 97.3 38 .......................G............. CCTGAGATGAGTCGACCACAGTCACCTTACGAGCGGTT 9516 37 94.6 35 .............A.......T............... TCGGTTCGGTCGACGAGGCCGAGGTGCGCGGCCCA 9444 37 91.9 36 ..A................AA................ GACCACGACGACATCCTGCGCGACGCCCTAAAGCTC 9371 37 78.4 0 ..........................T..CGGC.CCG | TG [9338] ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 98.1 36 GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Left flank : TGCTCCCGAACGTGCAGGCGCGGCTGTTCGCACGGCACCTCCGCGGGGATCAGCCCGCCTACGAACCGTGGATCGCGAGCTGACGTGGAACTCCTGATCACATACGACGTCGACACCACTACATCAGCCGGACGCCGCAGGCTCCGGCGAGTCGCGAAAGCTTGCGAAGCGTACGGAGTCAGGGTGCAAAAGTCCGTGTTCGAGATCGTCATGAGCGAAGTGCAGCTGTTGCTCTTGCGCCAACGCCTGCTCGACATCATCGATCCGGAACTCGACAGCATCCGGGTCTATCGCCTCCCCGGCCGGGCCTTCAACGAAGCTCAACATCTCGGCCATTCACCGCCGGCAGGCCACGACACCCCGCTCATCTTCTGATCGAAGCTTCGGAGTGGGTAGCGTCCTGGGACACGCCGTTTGGCTCTGAAGCGATTCCCGGGCGTGTCGATAACGGTCGGAGAACAGCCACCTCAATGGAAGATGGATTGTCCTGCGTAAGCAGG # Right flank : CCTGGCCAACTCCTGTTTCTCTCGTTGTAGACGGGATACCGGCTAAAGGTGTGAACCGGTCTTTGATCTCAGCTCGACGAATGCGTCGGCGATGGAGAGAAGTTGCCGAGTATCGGCGGCTGCTTCGGTGGATGTGGGTGGCGCGATGATGCTGGGTGCCCGTCGGGGCATGTCGGAGCTGGTGCTGCGGTGGAGTGCGCTGTGGATCAGCTTGGCTTGCTCAGCGGCGGTGTGCGCGGTGTCGGTGGGCTCCGGCAGGTACGGGCTGAGGCAGACGAGGCCGTCGCGGATTTCGATGATGCGGCGGTAGGTGCGCAGGCGCATGGCGCGGAGGTGGAGGCGTTCGCGCTGGGGTGTGGTCGTGGGGAACAAAGCAATGGTGGGGAAGCGGTCGGTGAGGGCTTCCCAGAGGGGGCGGAGTCGGCGGTAGGTGCGGCGTGCCTCGAACCAGAGGTGGATTTTGATCAGGGCGGTGCGTGCTCCGGGGTAGCCGATGCCGA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.10,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 3118-3873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKB010000215.1 Saccharopolyspora sp. 6V contig_00215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3118 29 100.0 32 ............................. TCGGTGTTCTTGAACAACCTGGTCGCGGCGGC 3179 29 100.0 32 ............................. TACGTCCTGATCCCCGGCCGCTGAGACGCCCA 3240 29 100.0 32 ............................. TGGCCGTGCCAGTCGCCGAACCACTCCGCGTA 3301 29 100.0 32 ............................. CGCCTGCCGCCGATGTGATCGGTGACGACGTA 3362 29 100.0 32 ............................. TTCTGGCCAGCAGAAACACCACCAGGCGCACG 3423 29 100.0 32 ............................. TACGCCGCGGTCCGCATCCGGTCGTCATACCA 3484 29 100.0 32 ............................. GGGGGACGGGAGAGGAATCCCGTCCCCCCGGT 3545 29 100.0 32 ............................. CCGGGGCAGGGGGTGGAGCCAAACCCGCAGAC 3606 29 100.0 32 ............................. TCCGCTACACCACCAACACCCGTCCGACCGAC 3667 29 93.1 32 ............T...C............ GTGGCCGCGAGCCAGCCGAGTGCGCGTTGCAG 3728 29 100.0 32 ............................. CTCATCTCGACCCGGCGGAACACCACCTGCGC G [3743] 3790 29 93.1 26 ...........A.G............... GCCGCGTGCGACGCGCGCGGTCCCCG 3845 29 82.8 0 ..........GA.G..C....A....... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : CCCCAGCAGCACACCGATCCCGGACGCACCGCTGCACCGCAAGATCACGATGTAGAAGTGGAACCGCATGTCGGGAGGGTAACGCGGACCTCCGACGCGGGCGCTGAAATTGCGGTGCGCGTCGGAACGGGGGAATCGGTTGGTCCGCGATGCGCGGCAGAGGGTGGTCCTGCTCCTGTGCATGGCGCTCCTTGGCAACGGCTTGTCCGGCCGGCGCCCGCGAGATTCGGAGACGGATATCGAGCCGGGGCGATCGGGTGGCGACGCCACCAGCGACTGCGTGAATGGCGCCTCGGTGTAGAGCCGCGGCGCTCCAGACTCTTGGTCGAGGAACTGGTGGACGTCTGGGCTGAAGAGCCCGGGTGAAGTCAGTGCGCGCCGACATCAGGATGGTCGGCGCAGGGCGTAAGGGACGAGTTGACGCGGCGGTGCGTTACCGTCGCGGCATGCGTCCCTTCGAAAACGTGCAACGGCGTTCCTAAAACCCCAGTTCGCGAACG # Right flank : GCTCGATGTCGGCACGGACGGGCTCGGCGAGTTGTGTTCTCCATGCACGTGCTGACATCGGCTCGGGGGTCAGCGCATGTGCTGATCCCCGAGCGGGGTGGTTCAGAACGGTGCTTCGGCGCCTTGCTGGTGCGGTGTGGACGTGTTCCACGGGTCGTCGGATCCGGTGGGGCTGAAGCCGTTGGTGCTGCGGCTGGCCTTGGTGACCGCGGCGGTGGCGAAGCGCAGGCTCGGCCCGATCTCGTCGACGTCGAGTTCGATGGTGGTGCGCTTCTCGCCTTCCTTGGTCTGGAAGGAGCGTTGCCGCAACCGGCCCTGCACCAGCACCCGCGCCCCGCGGGTCAGGGTCTCGGAGACGTTCTCGGCGGGTTGGCGCCAGAGGGTGCAGCGCAGGAACAGGGCCTCGCCGTCGGTCCACTGCCCGGTCTCACGGTCGAAGGTTCGCGGGGTGGAGGCGACGGTGAAGTTCGTGACCGGGGTGCCGGACTGGGTGTAGCGCA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1023-686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKB010000211.1 Saccharopolyspora sp. 6V contig_00211, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1022 29 96.6 32 .............A............... CGGCGGGCGATCGGAAAGTACCGGCAGCAGTA 961 29 100.0 32 ............................. CTCGGCCCCTACACCTGGTGGGCCACCGACGA 900 29 100.0 32 ............................. TCAGCAATTCGCTGAGAATAGGGAGTGGAAAT 839 29 100.0 32 ............................. GCCCCGCAGACGCCGCAGGAGAAGGCGGAGCA 778 29 96.6 35 ..............T.............. CACCACGGGGTGGCACCGACGAAGGTGCTCCAGAG 714 29 89.7 0 ....C.......T.A.............. | ========== ====== ====== ====== ============================= =================================== ================== 6 29 97.2 33 GTGCTCTCCACGCGCGTGGAGGTGTTCCG # Left flank : AACGAGTCGCTGGAGTTGATCGGTAAGGTGAAGACCCAGTACAGGTAGGGCGAGAGCAATGTGAGAGGTCGCTGCCATGACCAGCACTGAGCTGCGACAGCTGTCGTGGCGGGTTTCCAGCTACACCGGCAACTCTGGCAACTGCGTCGAGGTAGCAGGCTTGCCGACCGGAGCACGCGCGGTCCGCGACACCAAGGACCGCGACGGTGGCATCCTCATCCTGGACGCCTCCGCGTGGACGACGTTCCTCGCCCGCATCCAACAAGGCGCCATGACCGAGTAGCCAGCCGTCCAGCCGAGCTCGGCCGGCCCGCCAGGGAAGCAGCAGACAGGTGAAGTGATCACGTTGCGACCGGGCCGCGAAGTCGGTTCGCGTCGTTCGACGGCCTGCCCCTGAGCGACTGGTGGCCACGACGCAACCGAGGAAGGTCCGATCCCGCCCCACCATGACCCTCGCCCAAAACGTGCAACGCCCCTCCTAAAACCGCAGTTCGCAAAGG # Right flank : GCGTGGACGAGCAGCCACGCGAGGATCAGTGGGACGTGACTCTCTACGCGCGTGGACCGCAGGAATCGCCGAGCTCATGAGAGAGCGGGCCAAGGCTCGTCGAGGATCTCGACCGGCCCAACGTCGAGATCCAGGTAGTGCCGTTCGGAGTCGGTTACTACATGGGCCAAGGCCACGACTACAGCATCTTCGGGTACGACACGAAGCCTCCGGTCAGTATCGTTTACCTCGAACACCATGACGCTGGTTCGTATGTGGATGACAGCAAGCGAGCGGCGCAGTCCCTGGGGCTGTGGGAGCAGCAGAAGGCTGCCGCGGTAGGCCCGGAACAGACGCGCCGGTTGCTGCTCGACTTCGCGGACGAGCTGTAGTTCGTTCGCCCGAGCACCGACGTTGAAGGATCGCCGCAGGGATGACCCCGATCGACGCAGACGCCGCCCGCCGCACCCGGGGAGTCTGGTTCAAAAGCTCGTACAGCAACCCGAACGGCAACCAGTGCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCGCGTGGAGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5675-5341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKB010000211.1 Saccharopolyspora sp. 6V contig_00211, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 5674 37 100.0 37 ..................................... CCGAACGAGCAGGCAGCCCGCGCCGCCGCGGCCGCTC 5600 37 100.0 37 ..................................... TCGTCCGGGTTGCGGGTGTGGGATGCGGAGGTGGTGG 5526 37 100.0 37 ..................................... GACCAGGACACGCTCACCCTCGTAGACCGGGACCCCA 5452 37 100.0 38 ..................................... TCCTGCTGGGGAGAGGCCACGATCGCCGACGTCGTGCT 5377 37 97.3 0 ...........T......................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 99.5 38 GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Left flank : C # Right flank : CGGGAGGTTCTGCCGACGCTGCGACTGCGAGCAGCCGGTGTGATGCCGACGGGCCAGTGTCGATGGGACGGGACAACAGGTAATCGCTGCGGGTGTGGTTATTTCCGAGGATGGCTTCGTCGTTGCCAGCCGTGGTGTTTGCCGCCGGTGATGTGGGTGAGGCGGTCGGCTTCGGCGGGGTGGAGTAGGTGGAGGGCGTCGTTGTTGCTGGCCCATCGGTGTTCGGCGACTTCGGTGGGGTCGGGGTCGGGTGTGGTGGTGCCGGTGAGGTGGGCTTCGAAGAGGAAGTGGACTTTGTTCTCGCCGGTGGATGATTCGGCGTGGGAGGTGCCTGCCCATAGCAGTTTCCCGGCGGTGGTGGTGAGACGGAGTTCTTCGTGGACTTCTCGGGTCATCGCCTCAGGTGGTGTTTCGCGCCCGTAGGGGTGGCAGCGTCCGCCGGGGAAGCTGAACTGTTCGTCGTCGGGTCCGCGGACGAGTAGGACTCGTCCTGCGGCGTC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.10,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 99872-98586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUKB010000031.1 Saccharopolyspora sp. 6V contig_00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 99871 37 100.0 36 ..................................... CCATGCATCGAGCAGCGCGCCGAGCAGTTCGACCGG 99798 37 100.0 36 ..................................... CTCGGGGACTTGGCCGCGAACTCGGCGGACCTGCTG 99725 37 100.0 35 ..................................... GCGGTGCTGGCCGCGGAACTCGCCCGGCTGCGGCT 99653 37 100.0 36 ..................................... AGGACCGCGTCGTCGCCGACGATGACGGTGGAGCGG 99580 37 100.0 36 ..................................... TCTCGTGCAGCGCCCCAGTTACTGCCCGGTGCGATT 99507 37 100.0 35 ..................................... GACCAGGCTGCCCGCGCCGTGGTCGGGGCGGTGAT 99435 37 100.0 38 ..................................... GACAAGTTCCACCGAGCATCGATCGACTGCCCGGCGAA 99360 37 100.0 38 ..................................... TCGTCGCCCACCGGTGGCTACGGGGCGATGCCGGTGGC 99285 37 100.0 36 ..................................... TTCATGCAGTCGTTGTGGGATCGCGCCCAAACGGCT 99212 37 100.0 36 ..................................... CAGACGTTGAAAATCATCGCCTTGTCGGTGTAGGTC 99139 37 100.0 37 ..................................... GCCGAGGGCTGCCCGGTGCTGTACCAGGAGTGATCGG 99065 37 100.0 37 ..................................... TCGGCTTTGGACAGCGGCCGAGTGATAGCGGGCGCGA 98991 37 100.0 37 ..................................... ATTCAGGAGGAGGACTGGTTCTCGGTACTGACCTTGT 98917 37 97.3 36 .................A................... GTCTTGCCCAGCAGCCACGGCGCCAACCACGGCAGA 98844 37 97.3 37 ..............T...................... CACCAGGTCGATGACCCGGCGCGATCCGGGCTGATCC 98770 37 100.0 35 ..................................... CTCGGACTCGTGCTCTACCCCACTCTCGCCCAACT 98698 37 83.8 37 .C..........T..G....G.AG............. GACGGCTGGCCCGGCACGAGTGGCCCGTGCGCCGAGC G [98691] 98623 36 86.5 0 ...CT..............-......C....A..... | CG [98612] ========== ====== ====== ====== ===================================== ====================================== ================== 18 37 98.0 36 GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Left flank : GGAGACGTTGCGCCAGGTGTTCAACGAAGCCCTGGACAACCTCGAGGAGCGCGTAGGGCACACCGTCGAATTCGACGAGGACTTCTTCTGGTCCATCCCCCGCGAAGCGCTCTACGACCCGCACGCCACACCTGATCCCGAACAGCTCACCCTCGGCCAGCTGACATCGTCATGGGACACGCTCAAACGGATGCGTGCGAACGGCGACTACATGAACGACCACACCCTGGTGTGGATCGCCGAAATCCTCCGGGCGCTCGGGCAGCGCGCTCGCTGAACGCGCTGCCCGGAGTCTTTTGGGGCGTTCGCTCCGGCCGCGGCAGTGGTCGGACGATGTGCCGGGTGTTGCCGTCAGAGGTGGCTCCACTGCTCCTGGCGTCGGTTGGGAGCTGGTAGCGTGGCGCGACACGCCTGGGGGTTCCCAGCCGATTCCCGGGCGTGTTGATCTCGGACGTGTAACTTGCCAGCTCCAGCAGGGGTGTTTCCCCTGATCGAGCAGG # Right flank : GTATGGACGCTTGGGCGGTGCCTGGTAGAGGCCAAGATGTAGAGCTTCGTTGACAGGTCGCACCTGCCCTCCTAGGGTTTCCGCTATAGTGGAAATATGGTCGAGGTAACGTGATCGAACTTATTGGTGAACGCCTGGCCTTGCCCTATTTTGATGTTGCGAATTGGCGAAAAGTGGGCTTGCTGGGGAAGTACCTCTTGCTGGAGTAGAGCTGTGCCAATAGTCGATTCCTGTTTGATAGGTTGGTGGCGATCCGGTGGAGTTTACGAGGAGAATCGCCGAATCTGTGCTTTTTTGTGATTCCGGTGTTGAACCGGAAGTGTTAGAGCCGCTTCCGATGGCAGCGTTGAGGAACGAAGCAACAGGCTCTCCCCTGTGCCATCAGGTTGCTGCGGTCGACAGTCGTGGCAGGGTGTCCGACAAGCTGCTGATCAGCTTCCTTGGCTGGCAGCCTGGCGACCGCCTGGTGATCCAACTTGCCGGGAGCCTGGTGGCTACGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCGCCAGGGCCGATGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.10,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //