Array 1 1916941-1917447 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009518.1 Methanococcoides methylutens MM1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================= ================== 1916941 29 51.7 73 T..G..C.....A...TA..ATGAAA.TG ATGATAAAATTAGCTTGAAAAAATATATGACGAGCCGTCGAGGCTATTAAAATATCCGCATAAATGAAACAAA G [1916952] 1917044 29 72.4 15 ...G......A...T..A.AT.....TC. ATCATATCTTTGGTA Deletion [1917088] 1917088 29 93.1 36 ................AC........... TACCTTACGGAAAGTACGTATATTAGAGAAAAAGTC 1917153 29 79.3 38 AA....C.......T.A.A.......... TTGTATATTGAAATTGTGTAGCTTCGCAACCGGACAGC 1917220 29 93.1 38 ................TG........... TTACAGCATAGGTATTGCAGACAGAGGATGTTTACATT 1917287 29 100.0 38 ............................. TTCGAACCCTTCAATCTCCTGAAGTGTTGGCCAAGGAA 1917354 29 89.7 36 ................A........A..T ACGTATGCTAAGTCTTGCGGCTTAGATGGTGACTTA 1917419 29 75.9 0 ........TG..A...AAA......T... | ========== ====== ====== ====== ============================= ========================================================================= ================== 8 29 81.9 39 GTTAAAATCAGACCATGTTGGGATTGAAA # Left flank : TGCTCAACATCTGACCTAATTTTATAAAACTTGGCCCAAGTTCCTCAAAAGCAAGACGGACCTTTGCAGCATTGCTTCGATTCTTTAAATCTAAAGCACATGTGCATTTCTTGTTGGAAATGTAATTTTTATGAATATCCTTGTACATCAATGAAAACAGATTATACTTCAAGAACACCCTAATGATAGTTGCATATCGTTTGGATTTTTCCAACATCATATTACATATTTGTTTTCTTCTTAAAGAGGATTTCCATATAAAAACCGTGGGAGGGGTTTCGTCCAGCAAAGTAAATCTGCAGATTGATTGAAAGATGAAGTTTGTATCATTTCCCTGTGATGCTGGTTTAATGAATCCATGTTTGAAAAGGATAAACAACGTCTATAGATTCGCTTTCTTGTTTGTCTATGAAATCACCTGTTTGTTAGGAAACGGAAATTGCCGTTTAGCCGGAATAGTAGGATTATTACAGACCAAATTTTTAGCACAACGAGCAAGA # Right flank : AAATATACTTTTAGTACGTAAGCTTTGGAATTGCCTCCGTATTGTAGCAAATTTATACCGATATTGCTTTAGATATAATTTTAAGATCCTGTTAAAAGAACTGTATTTCTGTTTCCGAAATGAAATTATCTAAATCAGATAATTAATTATCTGATTCCGATAAGTGATGCTATTGGCCGATATCGGAATATTTATACTCTTTTTGTAAATATATATTACCGATTTAGTCATATCTATTACCGATATAGTAATATTGGGCTTGACATAGCCCACGATAAGATTTTATTTTACTTTTGTCCCAATTAAGATAAAGCTTGTACTTACACGATATGTTATACGTATATCAAAGCCATATGAGGTACATATTAGCTATCCGTACGTAGATTTAGTAGAATTGTACAAACCTATTTTTTAGCCTGTAATCCAGTGATCCAACCTCTCTCTCACATGAGCATTGAGTGTAAACGGTTTATTACTCTTAGCGTTCTGCTTCAGGTAAT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.10, 5:-1.5, 6:0.25, 7:-0.63, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAATCAGACCATGTTGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 2 1934221-1931134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009518.1 Methanococcoides methylutens MM1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================== ================== 1934220 28 89.3 38 ..........G.T...C........... TTCGAAAACGACGTTGTAGAGTGTACAGGTTTTCAGAG 1934154 28 89.3 38 .............TA..A.......... TTTCGAAAACGGTATTTGAAGCGTTGAGTAGTAACTAG 1934088 28 96.4 38 ..............C............. GAAGGTGACTCCAGTTTCAAAGTCAATAGCTCCGATTG 1934022 27 75.0 40 ....C-....C..T..GA.....C.... TTCCCGTGATGCTTGCATTATCGTAAGTAATAGAATAATG 1933955 28 92.9 39 ............TG.............. TGTCGCAAAGGCGGTTGTAGCGATCAGAGTATCGAAGAG 1933888 28 85.7 37 ..........C..TC..A.......... CTTAAAAGAATATGGGTGTTTCAGCCCTGCACCTAAA 1933823 28 85.7 39 ..........G..T..CA.......... TAGAATTGCTGTTGCGATAACTCTTAGCATAAGTATAGT 1933756 28 92.9 38 ..........C.....A........... TAACTGACCCATAGTGTCGGTCATGATTTCGGTCGTCG 1933690 28 96.4 37 ................G........... GTGATTGTCTCATCATCCTGAAATGTTCCGGTGACGG 1933624 28 75.0 39 ..........C..TATGA..T....... AAACATGTAAACGCAATCAAGCATTTGCGCCGTTATAAA 1933557 28 89.3 38 .A...........G..G........... TGGAGGATTATAAGGTGCGGGTTCCCCGGTTATAGTTG 1933491 28 96.4 38 ...T........................ CTCTATCGTCAGGCTGTCGTTTGTTGTCAGCACTCCCG 1933425 28 78.6 38 ......C...C..T.TAA.......... TTTAAGTGAATAATGAACATTGTTACCGTCTGATACTA 1933359 27 82.1 38 ...T.....A...T..-A.......... TTCGCCACGGCATTTGCAGGCAGCTGAGTCGAAGTATT 1933294 28 96.4 37 ................C........... TACTGGCATCGTTGCACCTGCAAGCTTAAGCTCTGTG 1933229 27 78.6 40 ....C-....C..T..GA.......... CAGCATAACCTCTTGAGCCTCGCCAGAATCATCCACTATA 1933162 28 92.9 37 ...............TG........... TGAAGATACATCTCCATTCAGGAACGAGGACTTCTCG 1933097 28 85.7 38 .............T.TGG.......... TCACGATATTGTAGGTTATCTGTATGAATTCAATCCAG 1933031 28 96.4 39 ..............C............. TATCTTTATCTTACCGCACTCGCAAAGCTGTGGAGTCAG 1932964 28 85.7 38 ..........G..T.G.A.......... TGAACTCATGCGAAAATATGTCGCATACGCATGGTGGA 1932898 28 96.4 37 ................A........... CGGATAAGGTTTAGAAGAATCAGGTATGCGTCGCAAG 1932833 28 71.4 39 ..G.........ATCCGA...T...... TAAGTTTGGCACAGTTTTGTACTTGCCGTCACTGCCTCT 1932766 28 89.3 38 ..........C...C.G........... CGTACCCAAGTCGCGCGGCATATCGGTTGCTGTTTCTG 1932700 28 92.9 37 .....C..........G........... TAAACATTGGGCAATACTCCTTGTAGCTCTTGTGGCA 1932635 28 96.4 38 ................C........... TCCGACATACATATCGACAATTCCAATGAAGCAAAATA 1932569 28 100.0 38 ............................ CGACACAGTCTCCAAAGCTATAAAAGCAATGACTGTAG 1932503 28 85.7 17 ............T..CG..........T CTTATGGGATCACTTAG CTTAGG [1932476] Deletion [1932459] 1932452 28 92.9 40 ...G..........C............. TAATCTTGCACTAATGAAGATCTCCGCATACCATAAATCG 1932384 28 89.3 38 .....C....CT................ TGAACTTATGCGAAAATATGCTGCATACGCATGGAGGA 1932318 28 85.7 37 ..........C..T.G.A.......... TTACATTGCTGTTACATTGTGCATTTCCTGTGCTGCA 1932253 28 82.1 40 ..........G..T.TGA.......... AATACCATACTCAAGCCATGGCCGTTCAGTCGGATTACTA 1932185 28 85.7 40 .....C.......T...G.....C.... TGACACACTCGGATTTGTTTATATTGATCTCCACGATAAC 1932117 27 78.6 38 ..G-......C..TC..A.......... ACCGACATTTCGATCCAGAGTCTGTACTATGGCATCAG 1932052 28 89.3 38 ...............TG....T...... TATTGCCAGACCTGAAACTACTTTTAGAATTGTTTCAG 1931986 28 82.1 37 .......A.....T.T.A.....C.... CACACCCATCGTAACAGCATCAGCAACAACTGTAAGA 1931921 28 82.1 39 ...T...A..T..T...A.......... GTAGGTTGCGGCAAACTCTGCAGAATCAAAAATATTTAG 1931854 28 89.3 38 AC.T........................ GATTCCAGGGTAAACTATACCCATTCTAGCCTTAAGAG 1931788 28 85.7 38 .....C.......T.T.A.......... TGGGAACCAATTATCTCCAGTAGTATCCAGCATGATAG 1931722 28 92.9 39 ..........T.....G........... TGTCGCAAAGGCTGTTGTAGCGATTAGAGTACCGAAGAG 1931655 28 82.1 37 ..........G..T.TGA.......... TCGAATGCATCTCCTGCACCAGCTGCAATATCTGTAG 1931589 28 78.6 39 C............TATAA.......... CACCCAAGTTACAGGTTTACCAGCTTTATGTATCAATTG 1931522 28 92.9 39 .........A......G........... TGTGATAAAACCAATCACTGCAAGTGTCACAATGATACG 1931455 28 100.0 38 ............................ TTAAATCACAACAAATCCTAAACCTTCAACAAATTCTG 1931389 28 89.3 35 ..........C..T...A.......... AAACATGTAAACACAATCAAGCATTTGTGCCGTCA 1931326 28 92.9 37 .A..............G........... CAGCACAAAAGTTACAACACCGAGACCGCTCAGGATG 1931261 28 82.1 72 ..T..........T.TGA.......... AATCGCAAGGAAAATAATCAGAGGTGGTTGAATGAATTGGGACATCATTCCCAAGATCCGATAAACTGACAA 1931161 28 82.1 0 .............T...G......AT.G | ========== ====== ====== ====== ============================ ======================================================================== ================== 47 28 87.8 38 TTAAAATCAGACCATATTGGGATTGAAA # Left flank : TCTATAAACTGCAGGCGAATGAACCGGGAACATTTGAACTTATGCCCACTGTAGCAACCTATTCTAATGATGCAGAAATGGATTTCCCACAGGCTACCTCTAATAGACCTGTAATAACGGTCACCGGTGAAGAAAAAGTTCCTGATGATGAGAACGGTGAGGTTATCGAGTCTCAGGCCTACGTAATAAAGCTGGATAGATATGCTGCGATTCCTAACACTCTTGAGGTCAACAGAGGGGACACTGTTATCTGGAGAAATGAGCAGGAGGAAAGTAAGTACATATTTGAAGTTATAAGTGAAGATGGTCTTTGGGAGGAACAGAGTATTAATTACGGAATGGAGTTCAGCTATACCTTCACGGAGGCAGGAACGTATAATTTCATTGTCCCTCCATGGAACAGTATGAACAGTACTGTTATCGTTAAGTGATGGCGGAGTTTTCAAAGTGCAGTATGCAGATGAAAATAACCGGGAATATGAATTTTAGCACTCCAAAGG # Right flank : CAAAAGTCCTAATCTTTTGTCATATTCCACATTAGCAAAGAGCATATCAGAATCTTTTTCGATCTGCTCTCCTCTCTTTAATTTTTGATACTGGCCCAGACTTATAGTAACGATGTATTTCATTGCTTCAAAATACCTTTTATTTTCAATCTCCTCAAGATATTCAAGCTTAAATTGCAAAGGAACGATTTCTACAGACTGGTATAATGAATAAAAATCTTCTTCATTCCGCTTATTATTGATAAAAGGAACAATATTCTTGAGGAAGCTAGGGAAAATTCTCATTACTTTATCAAAATCATCCAAATCAGAACCCTGATAACCATTGGAATAGATCTCATCTACAAACTTTTGAATTCTGCTTTCTTCAAGAACATCCGTATCTCTTAAAAGCTCAAGAGTTTTTGATATAATTTCCTGGTTCTTATAAACAAATTTGTCTTTTTCAGAACCTTCTTCAAAGACATAGACGTGCTTAAGCACTTTGTCTTCCCATCCTT # Questionable array : NO Score: 7.64 # Score Detail : 1:0, 2:3, 3:3, 4:0.39, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAAATCAGACCATATTGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [63-66] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA //