Array 1 2983-262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGN01000155.1 Xanthomonas oryzae pv. oryzae strain IXO603 contig_155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2982 31 100.0 36 ............................... CTTCCGTATCGGGTAAGACCCTTGGGACGAACAGCA 2915 31 100.0 34 ............................... TCCGGTGGTTGGTGTTGGTTGGTGTTGCTTCAGT 2850 31 100.0 33 ............................... GATTGCGACCCAGGCTCCGTGGGCACCCATCCA 2786 31 100.0 34 ............................... TTTGGGACACGGCAGATATGGAGATGTGGGAAAG 2721 31 100.0 35 ............................... ACGAGAGGGTCTTCCACGGTCGCCTGTACGATGGG 2655 31 100.0 35 ............................... CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 2589 31 100.0 36 ............................... GTCCAATCACTTGTCGAGAGTGGCAAGCAGACTGAG 2522 31 100.0 35 ............................... GCCCTGGAGGCACAGCTGGATGGGCATACAGCCGG 2456 31 100.0 34 ............................... GCGCGATGACGTGAGTGGTGTCTGTCTTCTTCGC 2391 31 100.0 35 ............................... GGATCCCTGGCGAACTGAGTTACCGTGTTATGCAG 2325 31 100.0 35 ............................... TCTCCGTTATTGGCCGTGATGATCTTAATGATGGC 2259 31 100.0 35 ............................... TGGGTCGATTTGCCGGGGCTGCTCCTGCTGCGCAA 2193 31 100.0 36 ............................... TCCGGTAGACGGGGATCTTGTGTTGATGAGGCAGTG 2126 31 100.0 35 ............................... CTGTTAACTCCTGGCATTAATGTGGGGAGGGTTGA 2060 31 100.0 35 ............................... CAGCAATCACTGCTGCTAATCCGTCTGTTGCGACT 1994 31 100.0 34 ............................... TGCCAGGAGAAGGGAAGCTCAAAACTCCGAACCC 1929 31 100.0 34 ............................... TTACTCCTCAGGGTTATGTTAGGTTATACCACAT 1864 31 100.0 35 ............................... ATTGACATACCTGCATTTCAGGCTTTTATTTTGCA 1798 31 100.0 35 ............................... TTGTGTGGCTGTATCTGCACTGTGTGTCGTAATAT 1732 31 100.0 34 ............................... GACAATGGCGTGTCAGCTGCTCTCGGTGTAGGGT 1667 31 100.0 34 ............................... GCGGCCTCCAGCCTCTCAGCAAGCGACTTCGAAC 1602 31 100.0 33 ............................... CAGGCGTCTGCAACACAGCAGCTCCAAACGCTG 1538 31 100.0 34 ............................... GTTGAAAACTAGCATGTCACCAAATCCCGAGCGT 1473 31 100.0 34 ............................... ACCCACAGTCAGCAATATTGCCTGCTCAACAGTC 1408 31 100.0 33 ............................... ATGGGTGCCTGCCTGTGCCAGTATGTATGCATG 1344 31 100.0 35 ............................... GGTTGCCAGTGAGGTCTCGCAGATGATCCCTCAAC 1278 31 100.0 34 ............................... CAGCTTAGCGGTAATATCAGTCATTTTATTGGTG 1213 31 100.0 36 ............................... GACCAACAAATTGCCAAGGCTGATATCAGACGCAAC 1146 31 100.0 34 ............................... CCAGCAGGACTTGACCGCATGGTCTTTGCAGCTG 1081 31 100.0 37 ............................... CAATCAGATGCTTGAGCAGTACCCAACCCGTCTTAAC 1013 31 100.0 35 ............................... TTGGTCTTAAGCCCAAACGGCACAGCATTGTGACC 947 31 100.0 33 ............................... CAAGTGTCCTTACAACGGTGAGGGCTGTGTCTG 883 31 100.0 34 ............................... TCCTTGCGGTATTTGTAAATGAACTCCTGCACCC 818 31 100.0 36 ............................... ACGTTGTCCAGCATGTCAAAGACCACCAGGCCGGCA 751 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 687 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 620 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 555 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 489 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 424 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 357 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 292 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 42 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAACCTGCCCTTCAGGCTGTCCACGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //