Array 1 1118-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOX01000012.1 Erwinia amylovora Ea356 strain Ea 356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1117 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 1056 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 995 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 934 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 873 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 812 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 751 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 689 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 628 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 567 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 506 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 445 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 384 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 323 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 262 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 201 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 140 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : GCTGTTTATGAAAAATGCCAACAAACAGGAAGCGTGTTCCCCGCGTATGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14188-12025 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOX01000012.1 Erwinia amylovora Ea356 strain Ea 356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14187 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 14126 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 14065 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 14004 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 13943 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 13882 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 13821 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 13760 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 13699 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 13638 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 13577 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 13516 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 13455 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 13394 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 13333 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 13272 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 13211 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 13150 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 13089 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 13028 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 12967 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 12906 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 12845 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 12784 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 12723 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 12662 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 12601 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 12540 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 12479 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 12418 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 12357 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 12296 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 12235 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 12174 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 12113 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 12052 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77877-77548 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOX01000011.1 Erwinia amylovora Ea356 strain Ea 356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77876 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 77816 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 77756 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 77696 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 77636 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 77575 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88285-87340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOX01000011.1 Erwinia amylovora Ea356 strain Ea 356, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88284 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 88223 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 88162 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 88101 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 88040 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 87979 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 87917 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 87856 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 87795 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 87734 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 87673 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 87612 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 87551 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 87490 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 87429 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 87368 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : TTTCAGGAACGGGCCGACACGAAAATTTA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //