Array 1 1142312-1140879 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG669566.1 Lactobacillus acidophilus ATCC 4796 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1142311 28 96.4 33 G........................... TGACTACGATATTTTCTTTTAATTATATCTTGG 1142250 28 96.4 33 G........................... CAATATCATCAGCATTTTTCACACCAGAAAATA 1142189 28 100.0 33 ............................ CGATTTGCGTGGCAAATGAATGGTTGATCTTGA 1142128 28 100.0 33 ............................ TATTCTTTTTCACTATCAAAATCAAATATTTCT 1142067 28 100.0 33 ............................ CACAAAAAAGCCACCTAGAAGATAAAATTCTTC 1142006 28 100.0 34 ............................ CCTTAACTAGTGCAAATTTAATATTTGGATAGCT 1141944 28 100.0 33 ............................ TGTTTACAACATCATGGTTAGAGCAAAACTTGT 1141883 28 100.0 33 ............................ TATATACATAGTTGTTTGTTTCAAAAATTGCCG 1141822 28 100.0 33 ............................ TATATACATAGTTGTTTGTTTCAAAAATTGCCG 1141761 28 100.0 33 ............................ CTTTGGCCATCTTCGGTCTTAAACTTAGCTAAA 1141700 28 100.0 33 ............................ CGGGTAAACAAGTCAGAGTTACTCGCAGCAAAT 1141639 28 100.0 33 ............................ TTAGGCGAAACCCCGAGAGCAATTTCAAGCACG 1141578 28 100.0 33 ............................ TAAAACGTTGAAGCTTATTGTCCGCTTTAACGT 1141517 28 100.0 33 ............................ TGTTTACAACATCATGGTTAGAGCAAAACTTGT 1141456 28 100.0 33 ............................ TGGGTACCGAGGGTGGCAATATCTTCCTTATTT 1141395 28 100.0 33 ............................ TATATACATAGTTGTTTGTTTCAAAAATTGCCG 1141334 28 100.0 33 ............................ CGGAATGTATGATAAAAATTGGCTATTTGCCTA 1141273 28 100.0 33 ............................ TATTGATGCAACACCTAGCGCAAGTCAACCTGG 1141212 28 100.0 33 ............................ CAGGGTGGTTTTAAGTACGAGATTGACTACGAT 1141151 28 100.0 33 ............................ TGGCGAGAAGCTTATGAAGATCCTAGGAAAAGG 1141090 28 100.0 33 ............................ TATATGCGACTTATTTCTTACGATGAGATTCCA 1141029 28 92.9 33 ............A.A............. TCGATGGTAACTCTGTAGCTTTTAGAGCCTTTT 1140968 28 75.0 33 .....T..T.T.A.A........A.C.. TGAAGCACAATATTTTTAAAATAATTGGGCAAG 1140907 28 71.4 0 ..........AAA.A......C.A..TA | C [1140881] ========== ====== ====== ====== ============================ ================================== ================== 24 28 97.2 33 ATTTTCTCCACGTATGTGGAGGTGATCC # Left flank : ACGTATGTGGAGGTGATCCTAAGAGAAAACGGTGGTTTCCTCTTATTTTTATGTTTTCTCCACGTATGTGGAGGTGATCCTCATTGAGACACACATTGCGACGACTAAACTCTGTTTTCTCCACGTATGTGGAGGTGATCCTTTTAATGAAAGGTGCTAGTTTTGTGACACTTTGTTTTCTCCACGTATGTGGAGGTGATCCTGATTTTCCAGATTCGGCTACTATTTTGGCAGAGTTTTCTCCACGTATGTGGAGGTGATCCCTTAGGCTATTCCGCACACAATATGTGGCGTGGGTTTTCTCCACGTATATGGAGGTGATCCTGACTGCAATGCAAGCAAGAGCGGACATAGCAAGTTTTCTCCACGTATGTGGAGGTGATCCCGTCATAAATTAGCTTTCTGCCCTTTTGCGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGATGCACCGGTACTTAACTCAAATCAAA # Right flank : ACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAATGTTAACGGATTTAGGGATTACAAGCTATGAACTGAAGAATTATGAAGCCGACGATATTATTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1142821-1142427 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG669566.1 Lactobacillus acidophilus ATCC 4796 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1142820 28 100.0 33 ............................ TAAGAGAAAACGGTGGTTTCCTCTTATTTTTAT 1142759 28 100.0 33 ............................ TCATTGAGACACACATTGCGACGACTAAACTCT 1142698 28 100.0 33 ............................ TTTTAATGAAAGGTGCTAGTTTTGTGACACTTT 1142637 28 100.0 33 ............................ TGATTTTCCAGATTCGGCTACTATTTTGGCAGA 1142576 28 100.0 33 ............................ CTTAGGCTATTCCGCACACAATATGTGGCGTGG 1142515 28 96.4 33 ...............A............ TGACTGCAATGCAAGCAAGAGCGGACATAGCAA 1142454 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 33 GTTTTCTCCACGTATGTGGAGGTGATCC # Left flank : GCGTGGTTGTCTGCAGCAAAGGCTATCCAACGCACCCAGCACCTAATGTTAAGATCGGCAAGCTGCCTGAAGGTGCTAATACCTATATCGATTACGCCAATGTTAAAGGTGATTTGGAAAACTTGACGGGTGATGGTGGCCGCTTGTTCATGGTGATTTCGGAAGCTGACAATTTAGTTCAGGCACAAGACAATGTTTATTCTTATTTAAGTAAGCTTGATCTGCTGGATTGCTTCTACCGGCATGATATTGGTAATCGTGCTTTGGGAGATTTTAATATTATATAATGTCTTAACTTAATGACATTGATAAGGCTACCCATATTTTGTTTATTTGTAATCCTGTGAATATAATAGCAATTTAAAATTATTATATGAGCTAGATATATGTAGAAGAATATTTGATATAATTGTGTCGATGATTTGGTTGGGGAAATGCAAACTAAAGAAATTTTGCTTTTTAGTAAATTTAAAATAGCTTAACGATGGGATTCCTTTAGT # Right flank : CGTCATAAATTAGCTTTCTGCCCTTTTGCGTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTGATGCACCGGTACTTAACTCAAATCAAAGTTTTCTCCACGTATGTGGAGGTGATCCTGACTACGATATTTTCTTTTAATTATATCTTGGGTTTTCTCCACGTATGTGGAGGTGATCCCAATATCATCAGCATTTTTCACACCAGAAAATAATTTTCTCCACGTATGTGGAGGTGATCCCGATTTGCGTGGCAAATGAATGGTTGATCTTGAATTTTCTCCACGTATGTGGAGGTGATCCTATTCTTTTTCACTATCAAAATCAAATATTTCTATTTTCTCCACGTATGTGGAGGTGATCCCACAAAAAAGCCACCTAGAAGATAAAATTCTTCATTTTCTCCACGTATGTGGAGGTGATCCCCTTAACTAGTGCAAATTTAATATTTGGATAGCTATTTTCTCCACGTATGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //