Array 1 17626-18782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRU010000076.1 Limosilactobacillus fermentum strain ATCC 23271 scaffold34.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17626 36 100.0 30 .................................... AAACTAACAGTGGGATCACTTTCCTCAATG 17692 36 100.0 30 .................................... CTGGCTTATCTTACAACCAGATCATCGCTG 17758 36 100.0 30 .................................... CCATACTTGGCTAACGTTGCCTGCACCATG 17824 36 100.0 30 .................................... ATATCTGCTACGACTTGTAGTGCTTATGGA 17890 36 100.0 30 .................................... TGCGTCGCTGGTATAGCGCGCAAAGTGATA 17956 36 100.0 30 .................................... AACGCCGTTCGCTCAGACGATGTTCCAACA 18022 36 100.0 30 .................................... TCCGGACCTTGATCATCTTGTCTTGATAAT 18088 36 100.0 30 .................................... GAACTCGCCGTACATTTTCAACCGCGAAGA 18154 36 100.0 30 .................................... TTCTTCCGGATTGTGAAGAACGGTAACTCC 18220 36 100.0 30 .................................... GCCGATCGACATCCGACGTCGTGCGGTTTT 18286 36 100.0 30 .................................... TAAGGTGATCGCGCAACAAGGCGATCAAAA 18352 36 100.0 30 .................................... ACCACGAAATGGATTGTGGTGATCTATCTA 18418 36 100.0 30 .................................... TCAAAAATTCACGCTTCATGCTAATCTCTC 18484 36 100.0 30 .................................... CATCTCTAACCCACGCTGACCAACTGCCAG 18550 36 100.0 30 .................................... GGGAGACGGGAATCACGCGCCAGACAATCC 18616 36 100.0 30 .................................... CTGATAGCCGACCAGATTGAGGTCGGTTGA 18682 36 100.0 30 .................................... AAGCTCACGCCTGACTGTGTGGGATGGCAT 18748 35 86.1 0 ..........................-..TT..A.T | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.2 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGCTACCAAACAGCACTTGATAAGATGATTGTCAAAAATCTTAGCATTCAGAAACGAGATCGGATGAATGACCTTGCTCGTGAGGTGTTCTCAGAGATGCAAGATTCTTTGTTCGAATTCGACTTACCGTTGGAGGTGCGGTATGACGAGAGCCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCTAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTGGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGATCGTTAGTTTTTGATGAGAAAATAACG # Right flank : TTATAGACTAAGGGCGTTGCTGCTTTTAGCAATGCCTTTTTTAGAAGTGATGAGGGAAAGGTAAATGTTTTCACGTTGGTAATCTGACGGGAACTTTAGCGGGCGATGTGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTACCATGCAAATTGATCCCGAACGGATTCGCCCCGAACTGCACCGGATCGGCAAGGTGGGGTACGCGATCAACCTGATGGCCAGCCCGCACGCCTGCAACGAATGGGACGAATAACGGCGAAGGCGAAAATGCCCATTCACTCGCGGCGGGTGATCAAACAAGACGTTTGGATTGAACGCCCTGACCATAGCAAGCTTCGGCTGGCTATTTTCCGGGCCAAGCAAGTTGCTACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTACGCCTTGGAAACCGCCGAAAATGCCTTGGTTTATGCTGAACAGTTGGTGGCTGACGGACGGTCCGTGATGGTGGCGCCGGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 3318-849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRU010000115.1 Limosilactobacillus fermentum strain ATCC 23271 scaffold8.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3317 29 96.6 32 ............................C TTAAGCGATGACCAAAAGCAGGCGATTGATAA 3256 29 96.6 32 ............................C TAGCTTCAAGTACAGCTTTCCAACAAAAAAGG 3195 29 96.6 32 ............................C TATTGGCGTCAATCAGCTCTACTGGCACCGGC 3134 29 96.6 32 ............................C ATTTAAAGAGGCGGACAAGCTTTCGAAGCTAT 3073 29 100.0 32 ............................. CAAGTCGCTAACCGAGTTAATCTTAGCCAGGT 3012 29 100.0 32 ............................. CAGCGTGTTGCCATCCGCCTCTTGGTTAATCT 2951 29 96.6 32 ............................C AACCGCGTTAATACCATCGCGGAATGTCTTTG 2890 29 100.0 32 ............................. TTATTCATTGATGTCTCAGGATATCAAGAAGA 2829 29 96.6 32 ............................C CAGATTGCCAACATCATGGTCAATCGTTTCGG 2768 29 96.6 32 ............................C AAGTAGCTAACATTTCAGTTACAGCGTTGGTT 2707 29 96.6 32 ............................C AGGTTAAGCGAGCCCAAACGCACGTGACGGAC 2646 29 100.0 32 ............................. CCACACTCAGGACAGCATCCGTTGATGAGATC 2585 29 100.0 32 ............................. CGTTTCCAGTTTTCCACGTGGTCAATGATGAC 2524 29 96.6 32 ............................C AATGGATTTAAAACTACCAGAAGACAAGCCAG 2463 29 100.0 32 ............................. TTCCGGTCGTAGAATCGATGTTTAACGTCGGT 2402 29 100.0 32 ............................. CAGCCGTACAGCTAAGGACTCTAACAGATCTG 2341 29 100.0 32 ............................. ACTCGAGCGGTCGTGCCATACAGTTTGGGTGA 2280 29 100.0 32 ............................. AACATTGAAGATGGTACCATTGAAGGTGCTAA 2219 29 100.0 32 ............................. ATCTTTAGTATTACACGGAAAAATGAGAACAA 2158 29 100.0 32 ............................. CATCACTGGCCAAGAAAGCCAGCTGGAAGATT 2097 29 100.0 32 ............................. GTCATGTCTATCAGCCGTTGCCTCGATTTTAT 2036 29 100.0 32 ............................. CACAGGCCGACGATGATCTCACCGAAAACCAA 1975 29 100.0 32 ............................. ATTCTACAACAAGTAATCTCGGGCGCTGATAT 1914 29 96.6 32 ............................C GGACTGTCTAAACGCTTGTTGTTTGCGCCTGG 1853 29 100.0 32 ............................. GATGAAGAAGCCAAGGCGGAATTCATGTTAAT 1792 29 96.6 32 ............................C CAGTCAGCCGCCGGCCTGGTCCTTGCCTACCT 1731 29 100.0 32 ............................. CAAACGTGCCGGCTCTCTCTAGTGATCTTTAC 1670 29 96.6 32 ............................C AGCGGCTAACGCAAAAGGGGATGCCAGCATTG 1609 29 96.6 32 ............................C GACTGACTTAGGAGCCCACATCGTAATCTTGC 1548 29 96.6 32 ............................C GTAAGTAATACTGGTTTAGATATTTACTGGCA 1487 29 93.1 32 .....................A......C TAAGCAGCGACTAGAGTTTAATGTAAATTCTA 1426 29 100.0 32 ............................. TGTGCACAATTGCCTTCCATTGCAAGGTGATT 1365 29 96.6 32 ............................C TGGCGATGCTCTTTCTCCGCCGAGAACTTAGT 1304 29 96.6 32 ............................C GGCGTTGACGTGTCGAAATTCTCCGACAAACT 1243 29 100.0 32 ............................. ACACAGTACCCAGCGTGGGGCGGTTATTAGGG 1182 29 96.6 32 ............................C GTTGTTGACCACCAAAGCGATCAAGAAGACCG 1121 29 100.0 32 ............................. CCTGTGTACGAGTCGTCGTACTTGGTGCCACC 1060 29 96.6 32 ............................C TACTTGATTCAACGGGATGTAACTCAACCTGA 999 29 100.0 32 ............................. GAAATCCTTGCAAGGAACGATTGATGGAACTG 938 29 100.0 32 ............................. ACTGGCGGGCGAAGTTGATCAACCTCGTCATT 877 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 41 29 98.3 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAATCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAGTCGCTTGGTTACAGGGATCTTTTAAT # Right flank : TCTAAGGAGTGATATGGTTGAGAGAATGTACGGCCACTACTACTCACCAACCACGGTTTCAAACATCACTAAGCGGACGGAACACCTGGTTGAAGAGTTCCACGAGCGCAAATTCAAGTACTCACAGTACGTCTGTGTGTTCCTCGATGCTACTTACATTCCGTTACGCCGTGGTACCATTGAACGAGAAGCCGTTAACGTAGCGATCGGAATTCGAAGTGACGGCGGTAAGGAAGTTCTTGACTACAGTATCGCACCGACCGAGAACGGAGCCGCTTGGTCTGAACTACTCCAGGGATTACGCGCATGGGGGATTAAAGATATTCAGTTGTTCATCGCCGACGGTTTAGTTGGACTTCAATCTGCGATTGGGGCTAACTACCCGCAGGCAAAGTTTCAACGGTGCTGGGTCCACGCAGAGCGCAACCTTTTAGGGTACGTTCGCAAAAACGATCGCAGGGAGATTATCACCGACTTTAAGTATTCGGCAAGCAGAGAAC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //