Array 1 26308-26967 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB897985.1 Thioalkalivibrio sp. ALgr3 C998DRAFT_scaffold00010.10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 26308 36 100.0 34 .................................... CCGTTTACCTCTCATGGTTCTCCTCCGGTTATAG 26378 36 100.0 32 .................................... CGACTTCGAATTCCATCCCTTCAATGCGACCG 26446 36 100.0 32 .................................... CAATGGCAGCTGCGCCCATTCCGGCAAGGCCG 26514 36 100.0 33 .................................... CATCGAAGAGGTATCCATTGGTTCAACTCCTTT 26583 36 100.0 34 .................................... TTATCGGACGCAACCCCCATCCAGGTCTGCGGCG 26653 36 100.0 32 .................................... CGGGATCGGCACCGAGGTTACCGAGGACGATC 26721 36 100.0 32 .................................... CGTAGAAAAAGAAAGAGTACACAAAGGCTTGC 26789 36 100.0 34 .................................... TCCTCCGGCTTGCTCTTCGCACCCAAGTCGTTCG 26859 36 100.0 33 .................................... GTAGAAAAGTCGACCTTGTCGAACATGATTCAC 26928 36 94.4 0 ............................G...C... | CAT,G [26955,26966] ========== ====== ====== ====== ==================================== ================================== ================== 10 36 99.4 33 GTCTGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Left flank : TGTTGGTAAGTGAGTCGCCTGAGTGCGCCCCGGGAAGGTTGCCACGCGTTTGGGGATCGACGGTCTACGTCGGGTAGTCCCATTTCGATGATTGGAACAGGCTAGAAGGATTCTCGACGTGCGTCATGGGCGACAACCTTTCGGGGCCCCCCTGACTGAGGGTATCTATCGGCGATCTCACGGTGCGACGGGTGGAGAACGGGCACGAGGCCAGGCGAGTCTCCCCGGGTGTCGAGTTTGTCGGCATCGGGGTGGCCCGGAGCTGGCCGTGGCGCGTTCAGACAATTCGGCGGAATCTTTCTTCGCAGTGTTCGATACCCGGACGGGTCGTAGTGGTGGCCGGAGTGGCGGCACGTTGGCGCCTTGCGGGGCGCCTGCCCGGCAAGCTACCCTTGACGATGTCCATGACTGCTCAACAAGCAAACTTTCGTTGCACCATAATGGTGCAGATGTGGGCTTGGCAACCTATTGAAAGTAGCGATGGTTTTCGCGGCGAAAGA # Right flank : CCCCCAGATCCGAAACGACTTATCGTGGGTGCCGGCCGCTACTCAGACGAAATGGTTCGTGCGGATACGGGTAAGCGGCCTCGTCCGCTCAGGTCGGTTCGATGGATGGCGCGATTCAGGTTTGAGATTGCTGGTTGGAAGCTGTCCGGTTTGAACGGGAGCCTCGCGCCCGCGCCCGCGCTAGAGGCCAGTGGTGGAGCGAGGGAACTGTCGGGTGCAGGATGTGCAGACTCGTAGCCTGAATTCCGCCAGGGAAAATGGTCAGTAAGGGGATGTGTTTCCCAACAAGTGGGGACTGCGCGCGCGTCGCAAGTTAATGGCGTGGGCCGGGCGATACTCCGACGACGGCAGATTCGTTCCGTCGTGGCTGCGCTCATGGATCGGGAGCGTGTTCGGGAAGGGGGCAGTTCAGGGGCGGGGCAGTTCAGGGGCGGGGCAGTTCAGGGGCGTTGCCGGATGGGGCTCCTCAAATAAAAGCCGACGGCGTATCGTATTGGGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 41927-41471 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB897985.1 Thioalkalivibrio sp. ALgr3 C998DRAFT_scaffold00010.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 41926 36 100.0 35 .................................... GACCGATTGTTCGATCATTTTAACCTCCAAAAAAA 41855 36 100.0 32 .................................... GAATGATCGCCGCCCCGATCCCGGCAATGCCG 41787 36 100.0 34 .................................... AATTTCCTGCACCTCAGCTTCACCTGCGGTCATG 41717 36 100.0 34 .................................... CCCGCGTCACGGGCCTGCTTGAAGGTCATCCACC 41647 36 100.0 34 .................................... GGGTTTTCCTGGGTCGTGCGCTCGGCACGTCTAC 41577 36 100.0 34 .................................... GGCGATTTCCAGCTCGGCCGACGCCCCCTTGGGG 41507 36 94.4 0 ..................................GT | C [41474] ========== ====== ====== ====== ==================================== =================================== ================== 7 36 99.2 34 GTCCGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Left flank : CCGGCGAGTCATTCGTGACCGCCAAAGTCGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACCCAGTCACGGAAAGCAACGAATCGCTCAGCACGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACGATGGGCTCGCCTACGTCTTGTATGGCCCTGACCGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACCCAGTCACGGAAAGCAACGAATCGCTCAGCACGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACGATGGGCTCGCCTACGTCTTGTATGGCCCTGACCGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGACTGAAAGGGGATTAAGACGATGGGCTCGCCTACGTCTTGTATGGCCCTGACC # Right flank : CACACGGCCGATGAACATCGCTTCCATTTCCGGCGTACGACCAGCGTTTCCGGAGCATTGAGGCACTCCCTCAGCCGGAAACCGCCCTGGGACGCTGAAGCCCTCGAACCGCTGATCGACTGCCGTGCGCAACCGGTTACCAGGAACGCGCGCGACTTGAATCTCCGCGTCTCAGCGGTATTTCCGCCGAGTGCCGCACGTACCGGCGCTACGACACCATCGGGATATCTCCCGAGTCCGGCCACAACCTTTTCGCAGCTGCCGCAACCGCAATTTTTTTGTACCCTCCGGCGAAAAATCGTCCCCGCCGCCAGGAGGCAAGGCCTCCGGCCCGTCAAGGAAGGACCTATGCCCTACCACGCCTATCTGTTCGAAGCCCGCTCCATCCAGCCATTCCTCTTCGCCTCCGGCCGCCTGGCCGACATGGTGGCGGGGAGCGACCTGCTGGACGAGCTCTCGCGTGGCATCCTCGACCAGGCCCTGCGCGCCTGCGAGGTGGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 42952-42086 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB897985.1 Thioalkalivibrio sp. ALgr3 C998DRAFT_scaffold00010.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 42951 36 100.0 33 .................................... CTCCCCGCTTGCGCCGGGAAACCCTGCGCTCAC 42882 36 100.0 34 .................................... TCCGGGGACGCACCTCGCGTACACGGTTGAGGTA 42812 36 100.0 33 .................................... GTGAACATGGTAACAAGGATAAAAATGAACGTA 42743 36 100.0 33 .................................... TCTGGGTCACGTAACTCCAGACCACAGACCAGT 42674 36 100.0 34 .................................... GTGTATCCTGTGAAGGTTTCCCCCGTTTGGGGGT 42604 36 100.0 32 .................................... GGTACAGCCGGCTCGACATCCACCTCCGGCGG 42536 36 100.0 32 .................................... CGTGGTTCAGCGTCAGCGTGTCCGAGATGAGC 42468 36 100.0 35 .................................... GCTCCTCCGGCGAGTCATTCGTGACCGCCAAAGTC 42397 36 100.0 32 .................................... CCAGTCACGGAAAGCAACGAATCGCTCAGCAC 42329 36 100.0 34 .................................... GATGGGCTCGCCTACGTCTTGTATGGCCCTGACC 42259 36 100.0 32 .................................... CCAGTCACGGAAAGCAACGAATCGCTCAGCAC 42191 36 100.0 34 .................................... GATGGGCTCGCCTACGTCTTGTATGGCCCTGACC 42121 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 13 36 100.0 33 GTCCGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Left flank : AGGCTCTCGCTGTCGCCACTGCCCCGCGCCTCGATCGGGGCATTCGGCGTCAACCAGGCCAGCAGAAGACGGTCCTTGTCCGGATCAATCAGCTCGCCGAGCTGGAGGTAGAGCTCGTCCGCTTCCTGTGGGGCGAGAAGGCACTCGTGGACCGATTTCTGGCCATCGATACGCCACTGGACCAACTGCCGGTGAACGCGCCGGCGGCGCAAGGGGCTGCTGATGTCGTAAGCAATGATCGCGGGTCGACGTCGCATGGTGCGGCTCCTTTCGATTCGATGAATTGGCAATCGCAATCCTCGGCAATGCGCGTCGCGGTGTCCGGCGCGGCAAGCTTGTCGGGATTGTCGAGCCGTCGGACCTTGCGTGGCACCTCTCCGGCGGGCTAGCCTTTGGCCATGGTTGCTCCGGCTCAACAAGCAAACTTTTTCTGCACCAGATTGGTGCAGGACTGGACGTCGCAAGCCGCTGAATATACGGCTTATCTTCGAAGCGGAAGA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGACTGAAAGGGGATTAAGACGATGGGCTCGCCTACGTCTTGTATGGCCCTGACCGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACGACCGATTGTTCGATCATTTTAACCTCCAAAAAAAGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACGAATGATCGCCGCCCCGATCCCGGCAATGCCGGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACAATTTCCTGCACCTCAGCTTCACCTGCGGTCATGGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACCCCGCGTCACGGGCCTGCTTGAAGGTCATCCACCGTCCGACCGATGCCCCGACTGAAAGGGGATTAAGACGGGTTTTCCTGGGTCGTGCGCTCGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCGATGCCCCGACTGAAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //