Array 1 1592-952 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJED01000045.1 Bifidobacterium longum strain APC1465 contig0045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1591 28 100.0 33 ............................ CACGCCTTCCTGGGCCATGTCCACCATGATGAG 1530 28 100.0 33 ............................ GCTACCGCCGTACTTGTCGATGTTGCCCAGCTG 1469 28 100.0 33 ............................ CTTCACATAAAACCGGGGACGGGTCCCGGGAAC 1408 28 100.0 33 ............................ AAGGGCAATGACACCAAGACCGATGACCGGCAG 1347 28 100.0 34 ............................ ATTGGAGGCCTTGCGGTGATATGGTTCCGGCGTA 1285 28 100.0 33 ............................ CTTTCACCAAACAGCATACAGGCATACCTGTAT 1224 28 100.0 34 ............................ GTATTATCTCAAGGACCATGATCGCACATGGGGC 1162 28 100.0 33 ............................ GCCGACTCGCTGCGTCTGGTCGCTCTGGATGCA 1101 28 100.0 33 ............................ GGTGAGTGTCTTCGTCCGGCAGCGTCCCTCCGC 1040 28 100.0 33 ............................ TGGCACGTGCAAGTACTTGACTTGGTTGGTCTC 979 28 96.4 0 ..............T............. | ========== ====== ====== ====== ============================ ================================== ================== 11 28 99.7 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CTTGGAAGCGGGTGCTTAAAATATTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCGCTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 5828-5310 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJED01000045.1 Bifidobacterium longum strain APC1465 contig0045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5827 28 100.0 33 ............................ CGGCAGGCAGCTGTCGCATAAGCCCAGCAAGGA 5766 28 100.0 33 ............................ TCAAACAGGCTCTCGGATACTGAGAGCTGAGAC 5705 28 100.0 31 ............................ GCGTCGTGTTATGGCTATGCACGTTTGTGCT 5644 28 100.0 33 ............................ CATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA CC [5638] 5581 28 92.9 33 ............CA.............. GAAAGCGCCATTCGAGGATCTCGATGTCCATAA 5520 28 89.3 33 .T..........CA.............. GAACGAAAGTCCTGAACATCTCGCAGATTTTGC 5459 28 85.7 33 .T......T...CA.............. GCGTCGGCCGAGCTCAATCTGGGTGATGCCTTC 5398 28 89.3 33 .T..........CA.............. TTGGAACGCGCCGTTGCCTGTACTGCAGGCCGA 5337 28 82.1 0 .T.....T..T.CA.............. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 93.3 33 ACCTACCCCGCAGGCGCGGGGATAAACC # Left flank : TCGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTACGACGCGACTGGAGCCGACTGCTCGACTGATTGTCCACCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGAACAAATTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : TGTGAACCACTTTTATTGACATCTGACTTTTATCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTACC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCAGGCGCGGGGATAAACC # Alternate repeat : ATCTACCCCGCACACGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //