Array 1 75929-74376 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ440388.1 Apilactobacillus kunkeei strain Fhon2 Fhon2_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 75928 29 100.0 32 ............................. GGCCAATTCTCAGGAAGACTTTAGTAATGCAA 75867 29 100.0 32 ............................. CAATGTTCTTCTTCCGATATTCATATCAATTG 75806 29 100.0 32 ............................. AGACCAAATATCAAGCTTTAATGATGGTACTG 75745 29 100.0 32 ............................. ATGTAAAGAATGACAGCACTAAAGAAGATTTA 75684 29 100.0 32 ............................. TAGTAATGCACCGGCTATGTTTTGTATGTGGA 75623 29 100.0 32 ............................. GCGACGGGTCAGAACTTGACCGACATTGGTAA 75562 29 100.0 32 ............................. AAATACATATAAAGGAGTTTTTACATGAATAC 75501 29 100.0 32 ............................. GTGGGTTCAACTCCTACATAGGCTATTGGTCG 75440 29 100.0 32 ............................. GTATTAGTTAGATTTATGCCTAAGTTTGATAA 75379 29 100.0 32 ............................. ATCGCCTAACAAAGGAAGATGGCAAAGTCGAC 75318 29 100.0 32 ............................. GGTGAAGATTTATTTTTAACTGATTCCACTAA 75257 29 100.0 32 ............................. GATTAGAAATCACCCCGACTGGGCTGAACGAC 75196 29 100.0 32 ............................. TGCTAAATCGAAAGCTGATTCATTGGACACAG 75135 29 100.0 32 ............................. GATAGATACTATGCTAACCCTTTGTTAGATAT 75074 29 100.0 32 ............................. TGTCTTCAAGTTGTATGAAAAGACTTTTAAAA 75013 29 100.0 32 ............................. AGCTTTGTAGAAATCAATGTCTGTAATCTCAA 74952 29 100.0 32 ............................. TATATAACTACATTTTTATCCGTTTCAGTTTG 74891 29 96.6 32 ............................C ATATAAGGTATAGGAAGTCTAGGAAATGCTAC 74830 29 100.0 32 ............................. GGGCACATTTGTACCTATGGATTATAATACCG 74769 29 100.0 32 ............................. GATGATTCCTAGAACCAAGTTGAATGATGTTG 74708 29 100.0 32 ............................. CTGACCACCACAGATTAGTTCTGCATCTTTAA 74647 29 100.0 32 ............................. TATATGGATCCTTATTTAGTTGTAATAAAAGA 74586 29 100.0 32 ............................. ATCTATTCTCTATCCTCTGTTTCAACAAATTC 74525 29 100.0 32 ............................. TCGTCCATTTGCTTTTCAAATTCTGATTTTTG 74464 29 96.6 32 ............................C TAACCCGTGAAGATGCTGAAAGATTATTACAT 74403 28 93.1 0 ......................-.....G | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTATTTCCCGCATACGCGGGAGTGATTCT # Left flank : TATAGTCATCTGGTACGAAACCATGTAAAAAAAGTTTTTCGAAAATATCTTCATCTAAATCTTCTAATCCTTGATAACTTTTTTTCATTTGAAATGCAGGTGTAGCCTTACCTAGATCATGAGAAATCCCCACAAATTCTACTATTTTATTTGCATTACCACCATCTACTGCGTTTTCTATAATTTGTCGTTGATGTTCACTTAAGTAATGATTGTACAACATACCAATTACAAACTTGGTATCCAAAAGGTGTTGACACAACGGCAACCACTTGGCACTGCCATCTGTACCTTTAGCTTTTTTAGCCCAAAACAAATTTCGATCCATGATACATCCTCCATTCTAGATTAACTAAAATCATTTTACTCTAAATTTATAAACGTTAGCATTTATTAAAAATATATTCGCATATATTTTTAATAAATGCTAATATAATAAAAGTGAATGTAATTTAATTATATCAAAATACAAAACATTGATTTCAAGCCTTTTTTATAGT # Right flank : TAAATACTGAAGTACAAACATAAGGTAATATCAATATTTCGTCTTAATTTATTTTGAGACGCATCCAAAAAAAGATAAACAAAAGGCCTGACATTCGTCAGGTCTTCTTATTTATTCCTTTGCACAAAGATGTAATTTCCTATTAGCATAAAAATGAATACATAAATTGGTATTCCAATAAAATAAGCATACATTGGCAATAAAGTTAAGTGACTATATGATGAATCACCAGCTTGGTTAGTGATATTTAACATGTTGATTGGATTAAATCTTAGTAGCTTGTTTGATGCAATAACCATAAACATCAAATTAGACGCGATTGAAGCTGAGAAATACAAAATAATACTGATAGTAATTGATAGTCCAGATGATCTAAATATTGATGCTAAAAGGAAACATAGACTCACAATTAACCAGGTTGAGAAAAACTCACAGACAATATTGGTAAACAATGATTTCATATCAGCTGATGTAATTGCAACTCTTGTGAAAACAAAGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGAGTGATTCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 483178-484401 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ440388.1 Apilactobacillus kunkeei strain Fhon2 Fhon2_scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 483178 36 100.0 30 .................................... TTATTAATATACTCGTTGGTCTCAAAGCGT 483244 36 100.0 30 .................................... AGCTAATAATCAAAATACTACATCTGCTTT 483310 36 100.0 30 .................................... TTAGCGGATAGTTACAAAGGATTTAAAATT 483376 36 100.0 30 .................................... AGCAATATCGCCAACCAAGCTCAAGCTACA 483442 36 100.0 30 .................................... GAGATGTTGCGACATCAACACCAGCAATAC 483508 36 100.0 30 .................................... ATAATAATACCATTGTTACTGATTAAAGTC 483574 36 100.0 30 .................................... CAATCTTACGATAAATACCTTCGTTCGCTC 483640 36 100.0 30 .................................... ATGCGTTCTTAAATTGTTCTTTAAACGCTT 483706 36 100.0 30 .................................... AAGTTCCTTGAATTTGGAATGCATCCAACT 483772 36 100.0 30 .................................... TTTTATGTCCAAATTGCGGTGAGTGCATCA 483838 36 100.0 30 .................................... TTTTGGCCATTCATCAACTCGTCGAACTTG 483904 36 100.0 30 .................................... ATTAGAAAAAATTGAATATTTAGAAAGTAA 483970 36 100.0 30 .................................... GCAGTAACTGAATATTGCACTCATGTCGTT 484036 36 100.0 30 .................................... TGAAGATGACAGTAACAACCAAAAGATACT 484102 36 100.0 30 .................................... TTAGAAAGTCGTCATCATCATCAAAGCGTT 484168 36 100.0 30 .................................... CAGCACGTCGTTGCATACGCGCTAGGTTTG 484234 36 100.0 30 .................................... TACCGATTTTAGCAACATTATATACACGTT 484300 36 100.0 30 .................................... TTGCTTTTGAGTTAAATGATTTTCTTTTCG 484366 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTTTAGAAGTATGTCATATCAATGAGGTTTAGAAC # Left flank : ACGGTCTATCTACTAAACAAATTAATTCTATTTTAAAGAAGATAGTTGGTTATTTTGATAATGATGATATCGACTATATGCAAAAATCTATTTCATCGTTGAATAATTTTATTCAAGAAAAATTGTTTTTTTGGGATATACCGCTATTACTTACTCAAGATATTGATATAGAAAAAACTATAAAAAAAATGAATATTCATTTAAATCCAGACATTGAAGGAAATCCTTATGATATAATAGAGTTATTGATAAGGTTAAAAATGGAAACTCAAGATAAATCATTGATTGTTGTAAATAATTTAGCTAATTATTTGAACAATGATCAGATACAAAGTATTGAAAAACTATGTAAAGAGTTTAAGGTTCCATTATTAGATATTGAATTTGGTAAAAATAATGATACAAATAATACTGATTTTTCATTTTGTCAGTATTACTTTATAGATGATAACTTTGTTGACTGGCATCTTTAAAAATTAGATTTTGATTATAAAATATCG # Right flank : AGAGCTTGCGATATAAGCTCTTTTTTAGAAATAGATTTAAAATAAGATATATTCTATCTTATTAATTATGATTACGTTTCAGTTATCTATGATTGTAAAATGAAAATTTATAATCAAGATGTAGTGAATATTCAGATCATATGATTTTAACACTCACAATACAATCTTAATAAAAAATTAATAAACTTTACTTTTTCTTAATGTTTTCGTATAATACAGAAGTAGGTAGTCATTCCAGATGATTTATCTTAATGTTTATTATTTACAACTCTCTATAAATCTAATTGTGCACCTCTCTATGTAATCACGCACAAATTAGGTTGGCCTGTCCGATTATTGGGCAGGCTTTTTATTTACTCTATTTTATTTATGAATAATGATATACTTAATTTATTATAGATTTGGAGGATGCTATAAGAATTAAAGGAATTATATTAGCAATAATCGAATCAATATTTTGGGGTATGTCCGGAACTGTTGCAGAATATCTTTTTGAACAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGTATGTCATATCAATGAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //