Array 1 268605-269284 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOD010000001.1 Listeria sp. FSL_L7-0020 strain FSL L7-0020 NODE_1_length_1428095_cov_51.104567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 268605 29 96.6 35 ..............G.............. TACGGGTTGGGATAAAAGAATGGATCCGGAAAATT 268669 29 96.6 35 ..............G.............. ATATGAAACAGTACATCCATTGAATTCGCAATTCC 268733 29 100.0 34 ............................. CTCGGTCGTAAAAGAACTTTTTTTGCTCTTCTTT 268796 29 100.0 36 ............................. GAAAAAAACGGCGGTTCTGTAAGCGTTTGGGTGGAT 268861 29 100.0 36 ............................. GTCGGAAACATTAACCCTTCCGGAAAAGGTATGAAC 268926 29 100.0 37 ............................. GAAATTCCTTCGATAAAGTCGCATTCGTACACATTTT 268992 29 100.0 38 ............................. ATGCCAATAAACTCACCATATTTCTTGATGTGTTCACA 269059 29 100.0 38 ............................. GATGAATACCAAGCGGTTAGTAGAAGGATTGCAGCTGA 269126 29 93.1 35 .......T......A.............. AGATTGATTCGTTGCGATAGCATAAGAATCTTGTG 269190 29 96.6 37 ..............A.............. TTCGATGGCTATAACGCACGTATGCATAAAGGCGAAA 269256 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 98.1 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCTACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAATCATCACATCCGACTCTATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATTTTAGGACGAGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGGATAAATCAGAAAACAGTAACTCTTAGGGTTGCTGTTTTTTTGCGTTTGGTTATCTGTCGACCTTGGGTAGCGTGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGATTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCGTTGGTTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCATTTCCAATGCCTACACAAAAAAGCCAACCAACAGGATTTAGGCTTATTTTTTATCCTCCCACGTTAACAATTCCGCAACAAACACACCAAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACGCCCAACATATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACTAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAATATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGCGAAGTAGAGATCTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGCGATAAAATAGATATTTCAGAACCATGGTACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGATACTTAGTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 284230-285885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATOD010000001.1 Listeria sp. FSL_L7-0020 strain FSL L7-0020 NODE_1_length_1428095_cov_51.104567, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 284230 29 100.0 37 ............................. AAAATGTTACAGAGCCAAGCGACATACCTGTGATAGC 284296 29 100.0 36 ............................. TTCATATGGATTGCGAGGCGGGTTAAATGACATGTA 284361 29 100.0 36 ............................. AGGCGATTACAAAGAAGAAGCAGGAGCATGGATTCG 284426 29 100.0 36 ............................. ATTGATGCCATCATCGGTTCTAATAACGGCATTCAG 284491 29 100.0 37 ............................. CCCAATTAGTACTCGCAACAATTGTGCAATTTTATAT 284557 29 100.0 38 ............................. ATTGCTCGAAGCTTTTTTTCACATCTTTCGACATTTCA 284624 29 100.0 34 ............................. TCTTCTCTAAGCGCTCGATTTTAGCATCTTTTTC 284687 29 100.0 36 ............................. AAGAATTTAACGTGGAACCGGAAAAAATTTTAGACC 284752 29 100.0 34 ............................. CTTACAGCCTTCACGTTCTAGTTCCTCCATTAGT 284815 29 100.0 38 ............................. ATGACCACAAAGCAAAGCAATTGGTGCCGTTAAAATAC 284882 29 100.0 35 ............................. AGTCTTTAGTATGGTTGCTATGAAAATGGCTTAGG 284946 29 100.0 35 ............................. CCGTAACCGGCGGCTGCTATGGTGATGGTATATGA 285010 29 100.0 36 ............................. TCTTTTTCAAATAAAGCCACAAAAAATAGCGGTAGC 285075 29 100.0 36 ............................. CTCCATATTTTTTAGCTCGATTAGTAAATTGTTCAA 285140 29 100.0 37 ............................. TCATAAATACCCTATTGAATTAGTGAAAAAGAATCTC 285206 29 100.0 38 ............................. TCATCATTTGAGTGCCTGCCTCGATAATACCGGGTAAA 285273 29 100.0 37 ............................. ATGGATGATGTGTTAGTGTGAAATTGAAGTTTATACC 285339 29 100.0 36 ............................. ACAAGGAACTTTATTTTGATGTGTGTGGGTGAAACA 285404 29 100.0 38 ............................. ACACTAGTGACCATTCTGCAAATTACTTGCTCTTTATC 285471 29 100.0 35 ............................. AAGCTAACTGTTTGCGAAACTTTACCGTAACCTGT 285535 29 100.0 35 ............................. ACAGCTTCACTGATCAATTTAATATTTAAAGCAGA 285599 29 100.0 37 ............................. ATTCTTTAAAGTTTGTAGAACGTTGGGCTGTTAAACG 285665 29 100.0 34 ............................. TTGGGCCATAAAAACATAGCCTCCTGAATATCCT 285728 29 100.0 35 ............................. TTATTTTCTTCTAAATATGCTCTTACTTTTTCGCG 285792 29 100.0 35 ............................. TTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 285856 29 86.2 0 ...............C......CA....C | C [285878] ========== ====== ====== ====== ============================= ====================================== ================== 26 29 99.5 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTATCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGTAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATTCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCCATTCCAGCCCCAGCAAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //