Array 1 1311-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGBKN010000030.1 Psychrobacter sp. F2608 scaffold_30_length=28916, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1310 29 100.0 32 ............................. GCTTGGGGGTGGTGGTCAGGTACGGTATGACG 1249 29 100.0 32 ............................. AGTCTCTTAGGACTTTATCTTTATGCTGACCA 1188 29 100.0 32 ............................. GTACTACTGATCATCGCGCTAGTCGCGTTATC 1127 29 100.0 32 ............................. ACACTGAGAGAGTTGATTTGCTCGATGATATC 1066 29 100.0 32 ............................. CGTTTAGGTTAGACTTGGGTGGTGGTATGAGT 1005 29 100.0 32 ............................. AAACCTATAACAAGTACAGCTCTATGGCTGAA 944 29 100.0 32 ............................. TTGTTGGCTTTGACTAATTTATTGGTGAATTT 883 29 100.0 32 ............................. GCGAGACGTAATAATCTGAATAAATCAGCGCT 822 29 100.0 32 ............................. TATTAAGGCGTTTAACGGCTCAATTAAGCTCT 761 29 100.0 32 ............................. CGTTAAAAATCAGAAACTTACCTGATTTTTAA 700 29 100.0 32 ............................. GTAGATTCAAAATGGCAGCAGCAACTGGAACA 639 29 100.0 32 ............................. CAACGGTGCTGATTCAAAAACAGAAGGGTTTT 578 29 100.0 32 ............................. ACACAATATGCGTGCAGAACGACATCACACCC 517 29 100.0 32 ............................. GTGTGTAGCCTGATAAGACGACATTTAAGAAC 456 29 100.0 32 ............................. CTATACCTTATCGCAAACATTACCCCAAGTCG 395 29 100.0 32 ............................. ACCGTTAAGGGGGCGAAATGATACCTTTTACC 334 29 100.0 32 ............................. CCTTCGTTAGGATTATCAAAAGCTACTTTTGC 273 29 100.0 32 ............................. CTGCCATTGTTAGATCAAGATAAATCGGCGCT 212 29 100.0 32 ............................. CTCACATTGCCTGTTACAGGTTCTCTGATCCA 151 29 100.0 32 ............................. TTCACCACTATGATACTGTAGTAGATCGTACA 90 29 100.0 32 ............................. ACGTTATCAACGCGCAGGCGGCTGATAGCGAG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 100.0 32 CTGTTCCCCGTAAGCACGGGGATTAACCG # Left flank : CCGCCCGCCATTCCAGAGCCTGATTCTATCGGTAACGAAGGTCATCGTAGTCAATAGCTTGATAAGGAGATAGGTTATGAGTATGCTGGTTGTGGTGACTGAAACGATACCTCCAAGACTAAGAGGGCGCTTGGCAGTTTGGCTATTAGAAATAAGAGCAGGGGTGTACGTCGGTGATGTCTCACGTAGAGTTCGAGAGATGATATGGGAGCAAGTTTTAGCATTGGCTGAAGAGGGCAATGTAGTGATGTCATGGGCAACCAATACAGAATCGGGTTTTGATTTTGTCACTTATGGTAAAAATAGGCGAATACCAATAGACCATGAAGGCATGCGTTTGGTACAATTTTATCCTTTGGAGACTGATGAAAATTAATGCTTTAAATTTCAATAACTTAACCATCCAGAAGATGGACGGGGTATGCTATTTAACAACTAAAAAACTTGGTAGAATAATAACAATAGAAAAATAAGAATAATTTCATAGACTTACAACAAGT # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAAGCACGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 83973-87260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGBKN010000012.1 Psychrobacter sp. F2608 scaffold_12_length=93914, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 83973 32 100.0 34 ................................ AGGTTGCGCGACCGAGCGATACGCAGGGCAAACA 84039 32 100.0 33 ................................ TCTTTGGCGATGTTAGCCCCAACCATCTCAGGA 84104 32 100.0 34 ................................ ATCTATCTCGCTATACACATAGGTATCATTGAGT 84170 32 100.0 34 ................................ TATTTGTTTCAGAACAAACATACTTTAGCAGATA 84236 32 100.0 32 ................................ ACCAGCAATCAAAGTAGGCGTTGATGATGGCC 84300 32 100.0 33 ................................ GTAGCCCTGTCGTACCGCTGATTGTGTAGTCGC 84365 32 100.0 33 ................................ CAGTAACAGATGTTATATTGTCGTTATTTGTAA 84430 32 100.0 32 ................................ TGTGAATTTGATCAACAAAGTCGCGCATCAAC 84494 32 100.0 33 ................................ TGGCCACAATCCACTTACGAGTATCAATCTGCA 84559 32 100.0 32 ................................ TTGACGTTTTGCCAAGCGTGGACTTATTCTGT 84623 32 100.0 34 ................................ TTACTGTTTAATATCATGCCATTAACCGCATTAA 84689 32 100.0 33 ................................ GAGATTGTGTCAAGCATTTATGTTTTGATATAC 84754 32 100.0 35 ................................ GCATATACGAACCACAACGTCAAGCACTTTTGTTC 84821 32 100.0 32 ................................ ATCACATTACGAAAAGTAGGGTTGTCTGGGTT 84885 32 100.0 32 ................................ CAAGTCGATGCCTGTTTTCTCAATTAGTAGTT 84949 32 100.0 33 ................................ CGACACCAAGTCGGATATACAACATAATGACCA 85014 32 100.0 34 ................................ CAACACTATTTTTTTCACCAGATGCTAACTTTGC 85080 32 100.0 32 ................................ GCCCTATAAAAATGTCAGCACGTTTGTGCATC 85144 32 100.0 32 ................................ CTCGTGCCATTCGCAGTCAAAGCTAATCTCTA 85208 32 100.0 33 ................................ GCCCAAACCTTGTTCTATAAACCAACCACTCCA 85273 32 100.0 34 ................................ AATCATGGCTAGCTCCTATGCAAAATGGATTAGC 85339 32 100.0 33 ................................ ACGTAGCACCTCATGATGTTGATAATCGCACAC 85404 32 100.0 33 ................................ CGGACAACTCAAAAGAACAAACGACCTCACTTT 85469 32 100.0 34 ................................ AAAAATACTTTGACTTTTGAGCCGCGCTCTACCG 85535 32 100.0 33 ................................ AGATACCGATTGAAAACATCGACCGACTAGGTG 85600 32 100.0 33 ................................ GCCTAGGTATATTTTTGCGCTGCCATATGGCAG 85665 32 100.0 34 ................................ TCGATGTTTGCAACCTCAGACTCCACCAGCTGAC 85731 32 100.0 35 ................................ TCGACCTGCTACCTCGTAAACTAGCGCAGTCGTGG 85798 32 100.0 33 ................................ AGGCTTGGCTAGATTAATCCATAACCAGCAAGG 85863 32 100.0 32 ................................ TAGCTGGCCGGTGAAGCGCTCGTAAATCAGCT 85927 32 100.0 34 ................................ GGCTTAGCTACTACAAGCACTCAGCGACAGCTTA 85993 32 100.0 34 ................................ ACTCAAATCACTAACGCCCTTGGCATTGAGCAAG 86059 32 100.0 34 ................................ GTATTAGCGTTAGCAATCTAATGGGTAAAGAGGT 86125 32 100.0 34 ................................ CTATTTCAAACACCTCGCTAATACAACCCAATCT 86191 32 100.0 34 ................................ GATAAATACCTCAGAAATGCCGAAGGACTTAACA 86257 32 100.0 33 ................................ ATCAACTGAACTCACAAAATGATGCACAAGCTC 86322 32 100.0 30 ................................ CGCAACCACAACCAAAATCTTACTTACTAG 86384 32 100.0 33 ................................ ATCATCGCCCTTGATCATAATCTTATACAGACA 86449 32 100.0 35 ................................ AGCGTTAAACGCGTGTCCGGCTTAGGAGCTACCTA 86516 32 100.0 32 ................................ CCAACCATTCAACGAGTAGAAGCATAAGGATA 86580 32 100.0 32 ................................ AATGCGTCTCAGTAGCTCACTCTTAGTAATCT 86644 32 100.0 33 ................................ ACGCAATTCGCAATCAAAGCCGATCTCTAGCCC 86709 32 100.0 32 ................................ GGACAGATCTTTCAAGTCGAATATTTTGTGTT 86773 32 100.0 33 ................................ TCCACCCTCTGGGTCTTTCAGGTAGTCTGCTTG 86838 32 100.0 35 ................................ TAGAACGCCTACAAACAGCCATAGACCTGCAGCGG 86905 32 100.0 33 ................................ CAAAAGCCCTTCGCATTACCAAAAACCACTTCA 86970 32 100.0 32 ................................ CCTAGTCTATTAGACATCGGTTGCAACATAGG 87034 32 100.0 33 ................................ CGTCCGAACGCCTAACCGACAACGACGACGGCG 87099 32 100.0 33 ................................ ATGCTGCATCTCCCAGCCCAGCGGCAGCTTATC 87164 32 100.0 33 ................................ GGTGGCGCTATAGGTGCTCTCTGATATGCTCTT 87229 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 51 32 100.0 33 TTCGCACCCATCACGGGTGCGTGGATTGAAAC # Left flank : TGATATTAGCTCGGAGGGTGCATCTAGCGCTAAGCGTTTACGTCACATTGCTAAGCACTGTTTGAACTATGGGCAGCGAGTGCAATATTCAGTGTTTGAGATTGAAGTTAATCCTGCTCAATGGACGACCCTTCGAGCTACACTTGAAGATATTATCGATCATGAGATGGACAGTCTGCGCTATTATTACATGGGTAAAAATTGGCAACGCAAAGTTGAGCATATTGGTGCGAAACCCGTGTTAGACTTAAATGATGTGTTGTTATTTTAATAACCCTGATTTGACTGTGATAAGGTCACTGCGAGCCTATAGCATACATAAAATGTCTGGTGTATTCGCAACGGGTCAGCAGAGCTATTTAACAACTTGATTTTTATGACTTTATTTTTTTATAATAAAACTTTGGTAAGCAAGATGCTTGCCAAATTCGCTTATGGTTTAGACGTTCGCAAATCTCAAGGTTTATTCATAACTTTATCAGCGACTTAGACTATGGGCT # Right flank : CAGTCATTGGACATCCTCTAGTCGTGGTTGCATTTCACACTGTCCAGTGTTCATCTTTGAGCATAGTGTGAGGCATAGCGAACGATATCTTTTTTGTGTGAGAAATTAAAGATTAACCGTTCGCTTTTTTTTGCCATTAATTTGTCGCCAATGTTCAACACGCCCTAATGATAAGCTGGTAAATAAGTTATTCTGAAAAATACATGTAAAACGCATCTCTCTAAAACAAAACTTGTAAAAGCTCTACTGACTGTCTTAGAATGGCATTGTTAAAAATCCTGTCTATTTTGTTAAGCCTTCTTTCTAAATTGCATCAACTTTAGGGTTTAGTCGAACAGGTCCACTTATCCATATATGTTACTTATACAGCATTCATAATGCTGAAAACACGATGACCCTATCATGTCTACTAAGCATCGAAAGCTTGTTTTACGATATTCATCACCAGTAATGATGTGGTTTGGCATGTTGGTCGCATGTTTCGCTTGGATCATGCACAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCACCCATCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5-643 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGBKN010000005.1 Psychrobacter sp. F2608 scaffold_5_length=152486, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 ............................. TTATGCTTACTTGGATCAACCGATAAAGATAT 66 29 100.0 32 ............................. AACAGCGCAATGCTGAGATTGTTGACAGCTTT 127 29 100.0 32 ............................. GCTTGCATATATTCGCCCACGTTGGCCAAATC 188 29 100.0 32 ............................. ACTAATCGTTATCTAATAGAGAGAGTGAGAAT 249 29 100.0 32 ............................. CACGGATTAACGCTATTGTCAGACAATTTAGT 310 29 100.0 32 ............................. ATTGATGAAAAGTTAGGTAAATCTGATAAAGG 371 29 100.0 32 ............................. GCTGCTCTTATTGCATCGTGTGAATCAGCAAA 432 29 100.0 32 ............................. TAATAATGATTGTATAGGTCTTTACTTTAGAA 493 29 100.0 32 ............................. CCGCCGGGGGCTGGCGTGGCAAACGATACCGG 554 29 100.0 32 ............................. CTCAATCAGCGTCAGGCAGATCTCAATCGCAC 615 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 CTGTTCCCCGTAAGCACGGGGATTAACCG # Left flank : GACGC # Right flank : GTACGCTTAGTAGGGTCTTTAGGATATTACTAGTAAACATCTGATAATCAGAACTGTCTTTAGACAATAAAAAACCCTTACAAGCTTATGCTTGTAAGGGTTTCTCGTTTTTCAATATATGGTGGGCCCAGTAGGACTTGAACCTACGACCAAAGGATTATGAGTCCTCTGCTCTAACCAACTGAGCTATGGGCCCTAACGTTAGACGCATAATGATACCTGATTTTTTTTAATTTTCAAGTAAAAGATAGCCTGTCAGACAGATATTATTCAAAATCAGCTGTTTTTCTGATCAAACACTACCACCTGCCAAAGTCAAATGGCGTCCACCATCGATGGTGATAATCTCGCCTGTGACATAGCTGGCCTGTGCTAGATACAGCACGCTATGGGCTATCTCATCAGGACGACCAATACGCTGCATCGGTATGGAGCTGAGGATGTTCTTTTGATCATCATCATTGAGGGCCTGATCACTATCAGCGTCGGGTAATATATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAAGCACGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6-339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGBKN010000066.1 Psychrobacter sp. F2608 scaffold_66_length=345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 ............................. ACGTTATCAACGCGCAGGCGGCTGATAGCGAG 67 29 100.0 32 ............................. CTACCCTAAAAAATGGTTCTGAAACTGTCAAT 128 29 100.0 32 ............................. CCACATATCTATACCATAGTGCCTATGAGTTG 189 29 100.0 32 ............................. TAAATCGACATGATGCAATATAGAATTTTTTT 250 29 100.0 32 ............................. TCGTTTGATACGACAAAAATGCTATAGCAAAT 311 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 CTGTTCCCCGTAAGCACGGGGATTAACCG # Left flank : GTACAC # Right flank : CGCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAAGCACGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [5.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-9918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGBKN010000043.1 Psychrobacter sp. F2608 scaffold_43_length=9924, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 29 100.0 32 ............................. TCGTTTGATACGACAAAAATGCTATAGCAAAT 62 29 100.0 32 ............................. CGCAAACATATGCGGATTTAATCGCCAAGTTT 123 29 100.0 32 ............................. CGATCAATCTTTATGGTTTTTATAATCAGCTC 184 29 100.0 32 ............................. CTCAAAATGTGCCGTTGCCTGTTGATGAGTGC 245 29 100.0 32 ............................. CGGTAATATGGCTGCTTTGTAGTTTCTCTAAA 306 29 100.0 32 ............................. TTTCGCAGCACCAAGAGCACCAACAGCAGCAA 367 29 100.0 32 ............................. CGCAGTATGAAGAACCGTTTATGAAGGAAAAC 428 29 100.0 32 ............................. AGCTTATAGAATGGCTAGCCTACTATGAATAT 489 29 100.0 32 ............................. GAGTTCCTTCTAGCTTGATACCTTTACCACCA 550 29 100.0 32 ............................. TACCTACACTATTAGAATTAACTTGTGCTGCT 611 29 100.0 32 ............................. GTGGTCAAAAGGTTTGTATTGATAGTCACCGT 672 29 100.0 32 ............................. CAGTATTAGTAACACTAGGAGCTTCTACAGCT 733 29 100.0 32 ............................. TTATACCTATTTTATAAAATGTTTCATTATTA 794 29 96.6 32 ............................A CCTAAAGAATTATCTTTAGATCTTGTTTAGTA 855 29 100.0 32 ............................. CTGGTAACAGTAGAATTAGTAGCTTCAGGATC 916 29 100.0 32 ............................. CTGCATTTGCTATTTAATTTAAAATAAATGCT 977 29 100.0 32 ............................. CAATATAACTAATAAATCTAGTGATAAATAAG 1038 29 100.0 32 ............................. TAATGACAGAGCCGTCCACTACAATCAACAAC 1099 29 100.0 32 ............................. GCATATTGGCGGCATCAGAGAACTGGTTACGG 1160 29 100.0 32 ............................. ACCTGAAAGCGAAAAAACTAACCCCTTTCTAG 1221 29 100.0 32 ............................. ACCTACTATTACTACTGCCCTTTTATCTGCAC 1282 29 100.0 32 ............................. ACCTACTATTACTACTGCCCTTTTATCTGCAC 1343 29 100.0 32 ............................. CCCTTATCTTAATCAATATAAATAATTAATAA 1404 29 100.0 33 ............................. GCTTAGAACAGCGTGGCGATGGTAAAGCTTCTA 1466 29 100.0 32 ............................. ACCAATGAGGTACTAGAAACCATACCCCATGC 1527 29 100.0 32 ............................. CTTAACTATCTTCTAATTCATTTCTTATCTAA 1588 29 100.0 32 ............................. TAATTCTAATATGTCTATTAAATCTATGCAGT 1649 29 100.0 32 ............................. TATTGAGAAATGTTTTGTATGAATGGGGCTAT 1710 29 100.0 32 ............................. GGAAATGATAGAGTGTGCTATTAATCGTGGTG 1771 29 100.0 32 ............................. CGCTTGCACGTTCTACCAATAGCGATGGGCGA 1832 29 100.0 32 ............................. TCGAAGAGGTTACCGCTGAAGAAACATCTGAA 1893 29 100.0 32 ............................. TAGTAAAATGCAACTAAAAATAGCAAATAATT 1954 29 100.0 32 ............................. CAATATATAGCCAATATAACTAATAAACCTAG 2015 29 100.0 32 ............................. GCATAAAGAAGACGATGCCGCCGCGCAGTTGG 2076 29 100.0 32 ............................. TCTTTTGGCTGCTTTTTTAGCCATGAGTAGTA 2137 29 100.0 32 ............................. CAATTATCCGTGATGTTAATGGTCAGCCGTCT 2198 29 100.0 32 ............................. CTCACTAAAAACACTGAGCGTAGGAGTAATGA 2259 29 100.0 32 ............................. CACAATCTGCCGTAGTTTAGACCAGCGTATAT 2320 29 100.0 32 ............................. ATTGGAATAGCTCAGGTTGATACATTGCAGAT 2381 29 100.0 32 ............................. ATTGCGTGCTGGGATACCCTGATAGCACTCAT 2442 29 100.0 32 ............................. CCTTATTAGCTTGTTGTAATATTCTTCTTACT 2503 29 100.0 32 ............................. CGCCTAAATCATTTTTTCGCATAGCATCCATA 2564 29 100.0 32 ............................. CACCAGTTACGCATAATCCCTTAATTGCGTTA 2625 29 100.0 32 ............................. TGAATATATGAGCCTATCATGGGGCGACCATG 2686 29 100.0 32 ............................. GTAGAATAATAAAAGCCGAGCCACTTTATAAA 2747 29 100.0 32 ............................. TATATTTGACGCCATGGGCTACTCTCTGCCTG 2808 29 100.0 32 ............................. TCGCTCACTACGACAAGGTTGTTGATCGGCAC 2869 29 100.0 32 ............................. AAACAGGAGCTATAAGCGAAGATACACCCGAT 2930 29 100.0 32 ............................. CTGCTTTTAATAGTTCAGGTGGGGAACGTAGA 2991 29 100.0 32 ............................. GCTAGATATGCTTGTTACTCGCTATATGAGCT 3052 29 100.0 32 ............................. GCAAATATGGAGGCCAATGATGTCACTATTTA 3113 29 100.0 32 ............................. TTGGTCAGACATGGTACGCAAAAAACCCAATC 3174 29 100.0 32 ............................. CTTCGATATATTAGACATAGATAAGGATGCAG 3235 29 100.0 32 ............................. CCGTGTTTTGCTCACCCATCATTGTCTTGAAT 3296 29 100.0 32 ............................. ACTGACGCAAGATAGCCAAATCTGATTGGCCA 3357 29 100.0 32 ............................. TCTGGTCTGGTCAAGGGGTTATCCATTGGCTT 3418 29 100.0 32 ............................. CGCATCGACACGATCCATATTGGCGGCAGCAG 3479 29 100.0 32 ............................. CACAGCCGATGCTTGACCGTTATTTTTTGATA 3540 29 100.0 32 ............................. GCACCAGCTACGGCAACGCACTGGCGTTTACG 3601 29 100.0 32 ............................. TCTTTATCCCATCTGCGGCCAGTCTCGCTTAT 3662 29 100.0 32 ............................. CATAACGATTAGTGTAGTCTTATGCGCTATCG 3723 29 100.0 32 ............................. TTTAGCAAATTGGGGGAGAGTTACCCAGTCTA 3784 29 100.0 32 ............................. CAAACGAATATCAGCATCAATGCTTGCAGCGA 3845 29 100.0 32 ............................. ATACCCCTAAATCTGCCCCAAAAACCGGCATG 3906 29 100.0 32 ............................. CAATTTTAGCTCAATCGACTATAGTGAGCTAG 3967 29 100.0 32 ............................. GTTAAGAGAACATCAACAATGTAAGTTTGATA 4028 29 100.0 32 ............................. ACCGTACTGTATTTCTCAGCAACATCTTGGCA 4089 29 100.0 32 ............................. TAGGTAGCCCTTTACCTTTACTTAGATCACGC 4150 29 100.0 32 ............................. TCAGCGTCGTGACATTCCCTGCTAACGATGAA 4211 29 100.0 32 ............................. AGCCTCACCAAACGCACCGATAAACTCTTGGT 4272 29 100.0 32 ............................. CATCAAATAGCTCCGACTCGTACTCATGTTCA 4333 29 100.0 33 ............................. TGCAGCAATACTGGGCGCGCTATCAAGATGCAG 4395 29 100.0 32 ............................. CAGCAGCACCAATACCTTTATCGACAGACACG 4456 29 100.0 32 ............................. GTTTTTTCGTTCATCAATTTTTGCTTTCGTTT 4517 29 100.0 32 ............................. GCAGCTAAGTTAAAAAACAATCAAACAAAGGT 4578 29 100.0 32 ............................. TTAATGTAACCCATACTACTATATATATTATT 4639 29 100.0 32 ............................. TCTTCTTGCTTAATATTTCTTTCTCTGAAGAA 4700 29 100.0 32 ............................. TTTTTGCGGCTGTTATCGGCGCGATTTTTGGT 4761 29 100.0 32 ............................. ACCGCCAGTTGCTAAACGGTGATGGCTTAACA 4822 29 100.0 32 ............................. CATATCGATGCTATCAAACAGTGTCACGCTAG 4883 29 100.0 32 ............................. TCTTCATCATGTTCGTCAAAACCTACCTCTAG 4944 29 100.0 32 ............................. AAGGATAACCCGCCCTTTCAAACTTGTCATGA 5005 29 100.0 32 ............................. CGCAGCATTACAGCAGGAATTTTAACGCTTAT 5066 29 100.0 32 ............................. AGTGCTTAATTTATTCTGCTTGGAACGATGAG 5127 29 100.0 32 ............................. TTTAGGTATCATGTCTCAAACGAGGCTATAGA 5188 29 100.0 32 ............................. GTTTGCTTGCATCCGCTTTTTTTTGACTTTCT 5249 29 100.0 32 ............................. TAAGTCGCTTTCATCTGTATTTTCATCAAATA 5310 29 100.0 32 ............................. GCGCAAACCTGACGCGGCAGGTAATTGGTCGT 5371 29 100.0 32 ............................. GCCAAAAATGCAGCGACTCGTGCGTCTCGCAA 5432 29 100.0 32 ............................. TTGAACGGCAATATCGGAACGTTGATTGAGCG 5493 29 100.0 32 ............................. TGATGTAGAGATGCCCGAGAGTTTGGATTTAA 5554 29 100.0 32 ............................. TCAATGAGCTTTAGCTTTGGTTACTTGCAGCC 5615 29 100.0 32 ............................. GGTTAAATCATGAGCAAATTTTTAACAGAACA 5676 29 100.0 32 ............................. CCTGATTATGTACTCGTGACTTGGTGATTTAG 5737 29 100.0 32 ............................. CGTGTTGGTCATGTGGAGATGACAAAAGACGG 5798 29 100.0 32 ............................. CAAGGTTTGCCGAGGATAATATCAACTTTAAA 5859 29 100.0 32 ............................. GGTTTTAAACTGCGTACCGTTGTATTTGCATA 5920 29 100.0 32 ............................. TTTGAGCTTAATGTATCGCTAACAACTGAGGC 5981 29 100.0 32 ............................. GAGCGCGACATGTTAAAGAAAATAGTAGATAT 6042 29 100.0 32 ............................. TCACCTACTCGGTGGTCGATGAGTCGCCTATC 6103 29 100.0 32 ............................. CAGGTATTTAGGGAAGCTGGCGGCGCGTTAAG 6164 29 100.0 32 ............................. ATGGTAAATCTTTTAGATATCGTTTCATCAGC 6225 29 100.0 32 ............................. AAAAAATAGTGATACACACTACACTCCTTTGA 6286 29 100.0 32 ............................. ATTGCGCCCCTCCATTGCGATTGCTGCCTGTA 6347 29 100.0 32 ............................. GCGCATTACTGAGTTAACAGATGCGCTTGAGG 6408 29 100.0 32 ............................. GGTCGGATTTGAAATCCAGCCCTTTAAAATCA 6469 29 100.0 32 ............................. TCCTGCAACCGTGGCCGCAAAACTAACGATAA 6530 29 100.0 33 ............................. GATTTGAGGGTGGGCATATTTACGCGGCTTCAA 6592 29 100.0 32 ............................. CGCAAAATTGCGTCTTGCAAAATCTTTTGAGC 6653 29 100.0 32 ............................. ATGAAATCTTGGCAGCGGTGAATAAACTAATC 6714 29 100.0 32 ............................. ACGGCTTTGTGTTCCTAGTAATGGGCTTTACT 6775 29 100.0 32 ............................. GACGGGTATTATAGGTCGACTGTTTATGTGTC 6836 29 100.0 32 ............................. TAACGCTAACAAATGGCGATTTATCAGAGTGC 6897 29 100.0 33 ............................. GTTCTCACGGCACCAATCAGGGTCATGCAATGC 6959 29 100.0 32 ............................. CATATCGATGTTTGTCAGCAGCGGTACTTTGG 7020 29 100.0 32 ............................. GGCTACAGATGTGCATAGTTTAAAACAAACCC 7081 29 100.0 32 ............................. GGCATGATGCGCGCATCGCAAACGACTATTAT 7142 29 100.0 32 ............................. TATCAGTAGAACCATCAGCACGCTTACAAGGT 7203 29 100.0 32 ............................. ACTGACGACGAGCTTTAACAACAACTTGAGTA 7264 29 100.0 32 ............................. CTCAGGGGCTTTATAGCACTAGCCAGATGAAC 7325 29 100.0 32 ............................. CATCTTGCAACCAATACAGCATCTCAGTGACG 7386 29 100.0 32 ............................. ATGCTGTCATTAAATGCCCGTAGGGGTTAATT 7447 29 100.0 32 ............................. GTAATGAATTATTGAAATTGGATAGGGCAGCC 7508 29 100.0 32 ............................. TGCTGACGATGAGCAGACATGGCGACTTAATC 7569 29 100.0 32 ............................. CCCCTTTTGATTTCCAGTCGAGAAGGGGTTTT 7630 29 100.0 32 ............................. CAGCGCAAACGCGATATCAACGCTCAGTTTTG 7691 29 100.0 33 ............................. ACAGCGTAGATTGCGACGCCAAGGCTTGAGCAG 7753 29 100.0 32 ............................. CAACACATGCTATTGCTTGTCAGATACCCAAG 7814 29 100.0 32 ............................. CCAATTAAATAGGCTTTTTGCTGATTTGTGTA 7875 29 100.0 32 ............................. TAATCACGCAATCGGATAGCGTCATCATGCGG 7936 29 100.0 32 ............................. TACACAACAGAAAACGAGCTAGTCATCGGTGT 7997 29 100.0 32 ............................. ACCCTGAGGCCGATGATGGTTATATAAAAAAT 8058 29 100.0 32 ............................. TACGACGGTGATAAATCAACCACGTTTAGTAT 8119 29 100.0 32 ............................. GTAATCAGCGAAAACCACGGTCATAAAATGGC 8180 29 100.0 32 ............................. TCGCTTGTGACCATTGGCGGCTGATAACCTCC 8241 29 100.0 32 ............................. CACCTGAGAGTGACCCAAATGATGCTATTGGA 8302 29 100.0 32 ............................. ACTACCACACGCTTGATATGTATGCGTATGAC 8363 29 100.0 32 ............................. CGGTAACGCACTGGCTGGCGGCTGGTTACTGA 8424 29 100.0 32 ............................. CTCATCTAAAAAACCTTCATATCCATCATAGG 8485 29 100.0 32 ............................. GATTGATTAAGAAGGACAAGGGGATTAAGGAT 8546 29 100.0 32 ............................. ACCGTGACGCTTACTTGGTTGCTGAAAAATCA 8607 29 100.0 32 ............................. ATAATGAACATCATTAATGTTGCTAAGACAAT 8668 29 100.0 32 ............................. AAACTCTTTAAATTCATTAGGGTTCATCATTT 8729 29 100.0 32 ............................. CGCAGCTGATGCCACCAGCTGATGATACCGCC 8790 29 100.0 33 ............................. CGCCCAAGGTTGCAGCAGTCACGATTGCGCCCA 8852 29 100.0 32 ............................. TAATATTGTGTTGTGGGTAGTGCCTTTTTCTT 8913 29 100.0 32 ............................. CTGAAAACCCCAATGCCGCCCATGACCGTGAT 8974 29 100.0 32 ............................. TTATGTCGGACTCTGCTAATGATGCTTTTTCT 9035 29 100.0 32 ............................. TTTGGTATTAACATAGTAGACATATCTGCTAT 9096 29 100.0 32 ............................. ACGTATCTTTATCAGTTAATACTTTTAAATCT 9157 29 100.0 32 ............................. CGTACCAGCCTCAGATTCTCAAATGATAGAGC 9218 29 100.0 32 ............................. CGTTTGTAGGTTTTAGTTGGTTATCACCTCTA 9279 29 100.0 32 ............................. GCTTAATAGAGATAGAGAGATTGGAAGCTAAA 9340 29 100.0 32 ............................. TTACTCAGATATACAATCGCAATGCAGACGAG 9401 29 100.0 32 ............................. TACCAGCGACCTGTCACTTGTTGGGTTTATAA 9462 29 100.0 33 ............................. CGTTTAGCGGAGGCATATAGCGCACCAAAAGCC 9524 29 96.6 32 ............................A TGAGCAGATTAAGAGTTTTTATGGCTTTTTCG 9585 29 100.0 32 ............................. TGATTTCTAATGCTGAAGCTGGCGATCCATCA 9646 29 100.0 32 ............................. ATGACGCTCAACGCAATCCCAGTTGATGACAG 9707 29 100.0 32 ............................. CCAATGCAACCACACTGAGCAGCCCAGCAGCA 9768 29 100.0 32 ............................. CATCCCCCGCCTCTGCGATGATGAGGAAAAGC 9829 29 100.0 32 ............................. CGCAGTGAACAGCACACCCTATGCGATGGACG 9890 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 163 29 100.0 32 CTGTTCCCCGTAAGCACGGGGATTAACCG # Left flank : | # Right flank : TTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAAGCACGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //