Array 1 1489560-1491479 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012363.1 Thiopseudomonas alkaliphila strain E1086 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1489560 28 100.0 33 ............................ TGGGCCGACTGCACGAGATGCTTGCAGAGGATA 1489621 28 100.0 33 ............................ CCACTTACGAGGCATTCGGTTTAGTAAACAAGA 1489682 28 100.0 33 ............................ CGGAATACTGTCGTCATCAAAGCCGCCATGCCA 1489743 28 100.0 33 ............................ CACTTATGGTGATCCGCGAAAGCTGCGTGGAAG 1489804 28 100.0 33 ............................ CGTTATTACTCATAGTTATAGCTCCATGGCGGC 1489865 28 100.0 33 ............................ CGCTGAGCCTGTCACTGTGGTTGATCGGGTGTA 1489926 28 100.0 33 ............................ CAGTAAAAACTACCGATTAGATGCTGGGCTGCT 1489987 28 100.0 33 ............................ TATCCATGATTTACCCCTTTAATATTTGGCTCC 1490048 28 100.0 33 ............................ TGATAGGCTCACCTGGTACTACGCGCGCACCCA 1490109 28 100.0 33 ............................ TGACCACGGACGAAATAAACGCTATTCGTGATA 1490170 28 100.0 33 ............................ TCAGGCAGGGTTACAGCATCGACTGCGATCATG 1490231 28 100.0 33 ............................ TCAGACAGGGGCGCTTGTTCGCCCCGCTTACCC 1490292 28 100.0 34 ............................ TCAGGATCGGGCTTCTACGCTTTGAGCTAGTCTA 1490354 28 100.0 33 ............................ CATTAAGTCTTTCATGATTTTCCCCTTTTGGTT 1490415 28 100.0 33 ............................ TACCGCGGTTTCCCCGTAGTAGTTAATGCGAGC 1490476 28 100.0 33 ............................ CCAAAGGGAAAGCCCTGCAGTGATTGTGGATCG 1490537 28 100.0 33 ............................ CAAAAGGCAACGATGAAACAATCATTTGCGTAT 1490598 28 100.0 33 ............................ CTAACGAGTACGGAAGCATTGCAAACAATATAC 1490659 28 100.0 33 ............................ CCACCTGATCGGCATCAGCTAGGATTTCGTCTT 1490720 28 100.0 33 ............................ TGAGTCGGTTATCAGTCGGATTTACGCTATTGA 1490781 28 100.0 33 ............................ TAAAAGGCGTTAGCTTAAAAGAGTCGATACACT 1490842 28 100.0 33 ............................ TGGTTCTTAGAGGCAAGTAAATTGTGACCCCAA 1490903 28 100.0 33 ............................ TGCTTAAGATGGCCGATAAAGTGCAAGGCATGG 1490964 28 100.0 33 ............................ CTTAGCCTCAAGCTTTGCGTCTAGCTCGGCTTC 1491025 28 100.0 33 ............................ CCCTCAGCTGATGCAGCGGGGGTGATGCTTTTA 1491086 28 100.0 33 ............................ CCAGCAGTGGTTTACCTTGCTGCTATCAACCCG 1491147 28 100.0 33 ............................ CGCTTTAAATGATCCGATCGGGTCTTCAAGCAC 1491208 28 100.0 33 ............................ TTCGGTATCGTCCATGCTTGCAAAACTGATCGA 1491269 28 100.0 33 ............................ CAGCTTTTATAGTAAAACAGCTTTAGAGCTAGT 1491330 28 100.0 33 ............................ CATTACCTCGTAGTGCTGCGACTCAACATGCCT 1491391 28 100.0 33 ............................ TGCTGAGTTGTTGGGCGAGGCGGACTTATCGGG 1491452 28 85.7 0 .......................AA.AA | ========== ====== ====== ====== ============================ ================================== ================== 32 28 99.6 33 GATTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : TATACAAGGAGCATTTGTGTATTGATCTTGCCTTTTCTCTAACCCGCGATATGGCCGGCCGCTATAACAAGCATAAGGTGTCAGCTGCGTTTCGTCAGCGGGTGTTAGAAATGGACTTGTTAAGTCAGATTGCGCCAGATATTGCCAGTTTATTTGGAGAAAAACGTGCTCGTCGTTCTCGCAAATGATTTGCCACCAGCTGTACGTGGGCGTATGAAACTTTGGTTTACCGAACCTCGAGCTAATGTGTTTGTATCAGGTATTAAAGATTCCGTTGCGCTAACGGTTATTGATTACTTGCATAAACATTGTCCACCAGAGTCTGGGGTGATGATCTTTCGTTCGTTATCGAAACCGCCAGGTTATGAAATACAAACGATAGGTCCAACACGTAAGTCATTAATAGAAATTAGCGGCTTACAACTCGTGATAGAAACCCTTAAAAATCAAAATACCTAACATCTTGTGCTTTGGCTGTTGTTCTTTAACAATATGTTGGT # Right flank : AAATGCCCGACGCTGATCGGGCATTGTTTTGTTTGCAAGATAACGAATTAAACCGCTACGGTTGCCTTAATATGCGGATGCGCTTGATAGTTTTGCAGTTCAAAATCTTCAAACTTAAACTCAAAAATATCCGTTACTTCAGGGTTGATCTGCATCTGTGGCAAGGCATAAGGCGTGCGGGTCAGTTGTTCGTCGGCTTGCTCTAAGTGGTTGCTGTAAAGGTGACAGTCACCGCCAGTCCAAATAAAATCGCCTAGTTGCAGGTTACACACTTGAGCAATCATCATGGTGAGTAGGGCGTAGCTGGCAATATTAAAGGGCACGCCTAAGAAGATATCGGCTGAGCGCTGATACAACTGACAACTTAGCTTGCCATCGGCGACATAGAACTGAAACAGCGCGTGGCAAGGTGGCAAAGCCATTTGATCGACTAGGGCCGGATTCCAAGCGCTGACGATTAAACGGCGTGAGTCGGGGTTAGTTTTGATCATTTCAATCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //