Array 1 284745-281957 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVP01000001.1 Ligilactobacillus salivarius strain FJLHD10M2 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 284744 36 88.9 39 AGA..........T...................... GTAAGACAAGACCTTACTTGGTTATGAGTGCAGAAACAG A [284738] 284668 36 97.2 39 .............T...................... TGTTCTACCCAGCTTTCATTATATCTCAAAAACGATGAA 284593 36 97.2 39 .............T...................... AAGGTGGGATAACATTTATTGGTTAAACTCCAAAGTTTA 284518 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTTAAAGTATCTAGATTTT 284443 36 100.0 39 .................................... ATCAAGCCAGAATGAAAGAGTTGAAAGTATCTAGATTTT 284368 36 97.2 33 ..G................................. ATCGAAAACGAGGCTAATAAGTAATGTTTGGAA 284299 36 100.0 36 .................................... TAGAACTCAGCGAAAAAGGGTCAACCATGAAAACTA 284227 36 100.0 41 .................................... ACAAAGTTTTACTCCAGACTCTGTTGCAAACTTACTCAACG 284150 36 100.0 41 .................................... ACAAAGTTTTACTCCAGACTCTGTTGCTAACTTACTCAACG 284073 36 97.2 38 ......A............................. TTTAGAACGTGATTTAAAAGATAACTTTACAATTTCAC 283999 36 100.0 38 .................................... ACCCTGGCTTTATTTTAGGTAGCAAGCCTAGACTACCT 283925 36 100.0 41 .................................... ACAAAGTTTTACTCCAGACTCTGTTGCAAACTTCCTCGACG 283848 36 100.0 37 .................................... TGAACGACTTAAATTTATTATAGGTTTAAAACCTTGT 283775 36 100.0 36 .................................... TAGCTTATAGTGATTTAGATGATATCGAATAAATTT 283703 36 100.0 38 .................................... ATTAACAAAATCAAAGCTATTTCAGAAAAGTGTCCAGA 283629 36 100.0 40 .................................... AATGAATTGGATTAAAGGGGGAAAATAAAAATGAATAAAA 283553 36 100.0 43 .................................... AGATGGCCAAAAATGCAAAAGTACACAAGGCTTAAAGTTTTGA 283474 36 100.0 37 .................................... GTTCAAATTCAGTAGTCCTAATGGAAAATTATCTTCA 283401 36 100.0 39 .................................... ATCAAAGATGCTGAAAAATGCAACAAGGCTTAAAGTTTT 283326 36 100.0 40 .................................... GACAGTAGCCAAATACGAGAAAGATAGCTCTAAAATACCT 283250 36 100.0 43 .................................... TTTGAAGATAAAATGAATGATCTATTCTTAGAATATGACTACA 283171 36 100.0 40 .................................... GCAAAGAAATAAGACATAGATTAAAAATAAAGAAATTTAA 283095 36 100.0 37 .................................... CCGTCCGTGAATTCGACTAAATCGCCAAAGAAATTAG 283022 36 100.0 38 .................................... CCAAAGTCAGTTGTTAAAGGTTTCTAATTAACAGGAGG 282948 36 100.0 35 .................................... GGAAGGTTGAAAAAAAGATTGATGAAATTCAAAAC 282877 36 100.0 36 .................................... TTGTCAGATAATAGATACCTTGAACACAAAGGACAG 282805 36 100.0 37 .................................... AATACGATTATGTTGAAGAAGGAGACTTCGACGATAG 282732 36 100.0 42 .................................... ATTTAAACGCTGGGTAACAAGTGAGGTATTACCAACCATTCG 282654 36 100.0 37 .................................... TTTCATTTCAAAATTAAATAGTTTGCTTTTCAAAGAC 282581 36 100.0 42 .................................... ATTTAAACGCTGGGTAACAAGTGAGGTATTACCAACCATTCG 282503 36 97.2 39 ..G................................. TTACGAACTTGAAGATGAGTTCACTGCTTTTACCAACAA 282428 36 100.0 37 .................................... TTATATACTTGCAAGATAAATGAAAGGAGGTACTTGT 282355 36 100.0 34 .................................... ATTACCATGAAAGGAATAATGCTAGAAATTATAG 282285 36 100.0 37 .................................... GAGCATCGATATGTGCATAGTGACGCTTTTCTGTTTC 282212 36 100.0 38 .................................... TGATGAGTGGAACTGATAAAGGATATGAAATCAGAGAC 282138 36 100.0 37 .................................... TCTTTTTCAATTTCGAATTCTTCATTCAATTTATCTA 282065 36 100.0 37 .................................... ACTGTTAGAAATACGCCATTCAATCTTATTTTCGTCA 281992 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 38 36 99.3 38 GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Left flank : TCATTTGAAGAATGACTAGGAGTTACGACTTGGTAAGCCTTAACATTGATATCTTTCAATCTATTAATAGTAAATAGCGCTGACTTCATTTGTGGCGTACCGCTAGACAAATTCAAAATTAGATCTTCATCTTCTTTAGAATATTTTGAAATTATTCCATTTAGTACTTCATACATTTTATCAAAAATAAATACTTCACTATCAGAAATGACTTCATCACTTTTTTCGATCATAGGATTATATCCATCTATAGAATTCAATGCTAACAAAATATTAGTCTCTTTTGATAAAGCACGCTCAGAATATATTAATAATATTTTTTGGGGACGAAATACCCTTACTAAATGTAATAAAGCTCCATCGTGTCTATTTCTTATAGGATCTGTATCACCAATACACGATATTAATGTTGTCATAATTACACCACTTTCTAATTAGTTATCTATATTATATATTATTTTTTCTAATTTTCGCTTTCTCTTGTCTACTTTAATTAAATT # Right flank : ATTCCTTGATCAATTAGTTGATACATCAACAACTATTGACATTTTTAATGGTACCCTAAACGGGCAATAGGTTAACTTAATAAGTATTATTTGGTCAAAATTCAGACAAGTTTTTATTTGTACTACTATTTCTTCCAATAGTGTAAGTGTATTATAACACAATAAATTGAGGTTTCCTAACAGTTTTCTTTATAGACTCACTTCCTAAAATCGTTATTTGTGAATCATTCACTTCGTTAGGAAGTAAATATAAAGTAATTACACCTGATTTAGGTAATCTATCTTTTAACACTTTAATTACTCTATCTCTAGTAGAATTTTGTCTTACTTCTCTTTCATACACACTAAATTGCTTCATTGTGAAACCTAATTCTACTAATTTCTTATGATATTTAGCTGCTTCTTTTCTATTCTCTTTCGTGTCTCTTGGTAAATCAAAACATACTAATAGCATCATACCTATCTTCCTTCCTCAATGAAAGTCGGTAATTTCAATCCTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTATATTCGGAGATATGTTCTTACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 50219-47357 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSVP01000007.1 Ligilactobacillus salivarius strain FJLHD10M2 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 50218 36 100.0 30 .................................... ACTAAAACCAACAGAAAAAAAGTAAAATCA 50152 36 100.0 30 .................................... GTCGTACTTGGCCGCATTGTGATGACAATT 50086 36 100.0 30 .................................... GAATTTTAATAAATTGGTGTAATCTGCTTT 50020 36 100.0 30 .................................... GATGATCTCGGAAAGATAATCAACATAGTA 49954 36 100.0 30 .................................... AACAGGATTGACACAGAAACAGATAGCTAA 49888 36 100.0 30 .................................... AATGGAAATATCAAAGTACCAAAATGCTTT 49822 36 100.0 30 .................................... AACGAAAAAACTAAACGTACTAAATACATT 49756 36 100.0 30 .................................... TCAATCGAATAACGATATCCACTAGGGTTG 49690 36 100.0 30 .................................... TAAGTTGGTTACAGGTAAAGTAAATTGTTT 49624 36 100.0 30 .................................... CGTTTAATCATGCTAAAACCATTCGGACAA 49558 36 100.0 30 .................................... GTGGCCAAGGCGTAGGTAAGACCACTTTTC 49492 36 100.0 30 .................................... ACGACGCTCAAAGTAATTCATACAATCCTG 49426 36 100.0 30 .................................... AAAATTCCTTTCTATCTTTCGTGTTGTTTC 49360 36 100.0 30 .................................... CCGCTCTGAAGCAGGAAGTGCAGGTCGAGA 49294 36 100.0 30 .................................... ACTACATTATGGAACATGCGGAAGAAATTA 49228 36 100.0 30 .................................... GTAAATTTAATATACAGACACCTAAGACAC 49162 36 100.0 30 .................................... AAGTTGAAGTGAAATTCAATCATAGATTCT 49096 36 100.0 30 .................................... GATCTTATGTTGAAGCTTTTAAAAACGGCA 49030 36 100.0 30 .................................... CAGAAAGAATTAGAACTCTCCAATCATCAT 48964 36 100.0 30 .................................... TTAATCCCTAACATCAGCAGGAACGACTGA 48898 36 100.0 30 .................................... AAAATGTTTATGTTGCAAAGAGACCTTTTT 48832 36 100.0 30 .................................... AAACGGAAATACAAGCAGATCCGCCAGTCT 48766 36 100.0 30 .................................... ACGAGCACACACAAATATTGCATTAATTAA 48700 36 100.0 30 .................................... GCTTTTTCAATTCCGTATACCCTTTGTAAA 48634 36 100.0 30 .................................... GTGGTTCAGAGGAATTATCTTCAACTTCTT 48568 36 100.0 30 .................................... CAATACTTATAGAACTTTGCTTTATAATGC 48502 36 100.0 30 .................................... ATTTAGCTCCTGTCGTTGTCTTCTAATTCT 48436 36 100.0 30 .................................... GTTACCGTCCTCAAAGTAAACTAACTCACC 48370 36 100.0 30 .................................... AAAAACATGTAAATAAATTCTTGGTAGGTA 48304 36 100.0 30 .................................... CAGTTGAAACACGTTTTACTCTTACAAAGA 48238 36 100.0 30 .................................... TTGCTATTTGAGTAGTGAAGAATACATTTG 48172 36 100.0 30 .................................... TGTTTCTAGTATAATTATACTCAGAACTGT 48106 36 100.0 30 .................................... GCTTCGAACCTTCCCAGCCCTTGACGCTAT 48040 36 100.0 30 .................................... CTACAAATGCAAAACAGGGTGCTTGCAGCT 47974 36 100.0 30 .................................... AAGATTTTCTATCATTTACAAACGTCTTCC 47908 36 100.0 30 .................................... ATGACAGTTATAAACAATTTAATTTACCAT 47842 36 100.0 30 .................................... CATCGTTTGCTAATTTAAAAAATTCTGTGG 47776 36 100.0 30 .................................... TATTGTTTCTTAAACTCTTTTTCTACTTTG 47710 36 100.0 30 .................................... GAAATTAACTGACAATCTTTTCTATTGTTA 47644 36 100.0 30 .................................... TTGATAAGCGAACCATTTATCGCCTTTCTT 47578 36 97.2 84 ..................................T. TACTTTCTTTTATGATATAATTTAGGCATAATTTCAGAAGTATATTAAAGATCTTTAGGACTTGGAAAGTCACAGGAGGATTAA 47458 36 91.7 30 ..........C.............A..........T GATCTACGTTACATTTTCTTAATGTTCATA 47392 36 77.8 0 ......T...A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 43 36 99.2 31 GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCAAATTAGCAAAAAATATATGAATGTATTGATCAAGAAGATTATTGAAGACATCACAGATGTTGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCTTTACAAGTAGATTATGACAATGATTTAACAAGACTATTTAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTAAATCTTGTTAAGGCGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGATCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATCGTTAAATTTTGATTATAAAATAACG # Right flank : TAAAATACAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTACGATATATTATGGCTGATAATACAATATTATATGGTATATAATATAGTTGAAGATAAGATATAGAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTATTAGATGGTTTAGTATTAGCGTTATTAGATAAGCAAGATTATTATGGATACTCATTGACACAAGATATGCAAAGGGCAATTTCGATTTCAGAATCAACATTGTATCCGGTATTGAGAAGATTGAAGAAGGGTGGTTTATTAGAGACATATGATCAATCGTATCAAGGGAGAAATCGTAGATATTATCGCATAACAGATAATGGGGAAGTACACTTAGAAAGAATAAAAAAAATGTGGAATGACTATAAAGTTAGTTTGGATGAAATTTTTGAAAAAACTAGGGAGGGGGAATAATAATGAACTCAG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //