Array 1 1301257-1304687 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAVZ01000001.1 Clostridium perfringens strain NCTC8359, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1301257 29 100.0 36 ............................. TCTGAAAGCTCTACTTGAGTTCTAGTAAACTCTTCA 1301322 29 100.0 37 ............................. TTTATTTTGTCAAGTCTATATTTAAAAGCATTTTCAA 1301388 29 100.0 36 ............................. GATGTCAATGGTACAAGGATTCTTGTTACTACTCCT 1301453 29 100.0 36 ............................. TTTTATTAAATTTAAAAGTCCTTATGATTCAAACTA 1301518 29 100.0 37 ............................. TTCTAATGCCTGTGTCAGAAACAACTATCTCATTATT 1301584 29 100.0 37 ............................. AAATTAATTTATGTATATTTTTATGTACTATTATGTA 1301650 29 100.0 36 ............................. GTTAGTGAATATCCAACTGCCTTTTGAACATAATTT 1301715 29 100.0 36 ............................. TCGTCAGAATAAGTTTTTTCTACATTTTTCTTTACA 1301780 29 100.0 36 ............................. TTATTAACATATGGAGAAAACAATATAAGTTTTACT 1301845 29 100.0 36 ............................. TTTTATACTGAACTATTAAAAAGCCATTACAGTCTG 1301910 29 100.0 36 ............................. TGTTAGAAACGCTTGGACTTCTTCTGCACTTTTAAA 1301975 29 100.0 37 ............................. CCGAAAACAACATGACAAAGGGGAACAATACGAGTTA 1302041 29 100.0 38 ............................. ATGGATAAACTATGAATTTAAAATAGTAGAAGAAAAGG 1302108 29 100.0 36 ............................. AGATAAAGATAAATTTGTAGCAGCAGTTTATACAGA 1302173 29 100.0 36 ............................. GGTGGTAATGGTAATTCAGGAACATCAAAAAGCTTA 1302238 29 100.0 36 ............................. TTATGAATATAATCCATATCATCTATTTTTCTTTCA 1302303 29 100.0 36 ............................. CACCTTAACTATCAAGTAAATCATCTAATATTTCTC 1302368 29 100.0 36 ............................. GCATACAAATAATGATGGTTCGGAGTGCCCTAATCT 1302433 29 100.0 37 ............................. TAAGCTGTACTGTTCCATGCTTCGTTTTTTCTTTCAC 1302499 29 100.0 36 ............................. GGTTTAAAGTTATTTGGACAAAATAAAGAGTTAATT 1302564 29 100.0 36 ............................. ATGTAATCATAGTATTGCATGCTGAAATTTTTTCTG 1302629 29 100.0 36 ............................. GTTACTATCTTTACATCATTATCAATAAATTTATCC 1302694 29 100.0 37 ............................. TTTTTATTGATTTAATATTAACATAATAAAAATAATT 1302760 29 100.0 36 ............................. TTATAGAAAAATATAAACCTGATTTCATAGTTTTTA 1302825 29 100.0 36 ............................. TTGTATTGTTAGAGTTTATGCTATTACAAGTAAAGG 1302890 29 100.0 38 ............................. AAGATAAGATATAATCATATTTGCGAGATATAATTAAG 1302957 29 100.0 36 ............................. TCTACTATATAAACAACCTTTCCTTCCTTAATGGCT 1303022 29 100.0 36 ............................. TTTTTAGATGCATAGTTTAAAGTATCATATTCTAAG 1303087 29 100.0 36 ............................. ACGGTGGTAACTCAGACAAGCGATTTGAAGAGTTAC 1303152 29 96.6 36 .......................A..... AAAGATTTATAATTTAATCTTTTTTTTAATGTATGT 1303217 29 100.0 37 ............................. GGAATTACAGAATACATACTAAAAATTAATACAGATA 1303283 29 100.0 36 ............................. GCTCCTAATAGTACGTTTTCTGTTTTATTTTCCATA 1303348 29 96.6 36 ..................A.......... AACATTGTTATAAATATCTTTAATATCATTATTAAA 1303413 29 100.0 36 ............................. TTAATAGCTTCTAATACATACTTAGCTTCATTCTTA 1303478 29 100.0 37 ............................. TAACATGATTTTCTTTAGCAAATTCTATAAGAGATTT 1303544 29 100.0 37 ............................. TTTTGTAAGAACTCCGGCATTTTTTCTGCTATAACAT 1303610 29 100.0 37 ............................. TCTGATAATTTTTTTATAGATGAATTTAAAGCTTTAG 1303676 29 100.0 36 ............................. GATGTTAATAAACGTATTAAAATAAAGCCTAGAAAA 1303741 29 100.0 36 ............................. TAGTGTTTCTAAATCAGTTTCTTCAAGTTTTATGTT 1303806 29 100.0 37 ............................. AAGTAAATTCATGATACTGTACCAACTAATCCTACAA 1303872 29 100.0 36 ............................. GAACAAATTGCAGAAAAAATAATAAGTATGTTTAGA 1303937 29 100.0 37 ............................. TGACTAGCATTAGTAATATTTAATGCTAAGATATTAC 1304003 29 100.0 36 ............................. TATATTCCTTCTTCTTTATCTTCTTTTACTGTTGAA 1304068 29 100.0 36 ............................. TATGTCAGATTGTATTTGTTATGGAAAAGCAACATG 1304133 29 100.0 36 ............................. TGACAGTATATAAGCTACTGACATTCCACCAGCTAT 1304198 29 100.0 37 ............................. AGATTTATTGATAGACATTCCCAAAGCTTCACCTAAC 1304264 29 100.0 36 ............................. ATATTCAACCTTTTATTTTGTTTCCAATACTTCCAA 1304329 29 100.0 36 ............................. TATCTACATTTTGCTTTACAAGTTCTAAATCACTGT 1304394 29 100.0 36 ............................. TAGGATAGTTATCCTCATTTATTACATACTTTTTAT 1304459 29 100.0 36 ............................. AAAAAAAAGTATTATGGTTAATGGAGGATCATGGAG 1304524 29 100.0 37 ............................. ATACAGAGAAGGAAAAGGGACAAGCTTCAGATAGCTT 1304590 29 100.0 38 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCATG 1304657 29 82.8 0 T................GAA....C.... | A,C [1304660,1304684] ========== ====== ====== ====== ============================= ====================================== ================== 53 29 99.5 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACATTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTCAGCATTTTGAAATTTGGG # Right flank : TATATAAAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCGAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //