Array 1 64232-60713 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCJS01000002.1 Moraxella catarrhalis strain 5008863L NODE_2_length_348552_cov_145.582280, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 64231 28 100.0 32 ............................ CTGTGATGCCTTACCTCGCACGGTGTCGGTCA 64171 28 100.0 32 ............................ CCTGACAATGTCGGATTTATCAATGTGGTGGG 64111 28 100.0 32 ............................ TGTAAATCAAGCTCAATTTCATGATTGCCTAA 64051 28 100.0 32 ............................ AGTCAGCACCGCTTTGATGATTGATAAGATAG 63991 28 100.0 32 ............................ TAGATCTGAGCCATTAAATTTCATAATGAGCT 63931 28 100.0 32 ............................ TTACTGTATTCACTCTTGGGTGCATTAGTTAT 63871 28 100.0 32 ............................ AGCTTGATTAAGTCCCATTTGTCATCGAGCAT 63811 28 100.0 32 ............................ ATCTAATGCAGACTGCGGCAAATTTGGCGTGC 63751 28 100.0 33 ............................ CTAGAATAAATGCACCTATTGCCATTCTCTTTA 63690 28 100.0 33 ............................ CTGTGCAAGTGCTGTGGTAAAATTTGCGTCGAC 63629 28 100.0 32 ............................ AAAAGGATCGGGCTATGATCTCTTAGGTGCTT 63569 28 100.0 32 ............................ TAAGCTATGCAGGCGGTCAAGCATATGACAGC 63509 28 100.0 32 ............................ TTCAGTAGTGATTTTACTGTCAATAGCTGCAA 63449 28 100.0 32 ............................ TGGTGATGTGCTATATGCTAAGTATGTTTGAT 63389 28 100.0 32 ............................ ATTTGCCATCAGAACCTTTGACGGCGTTCATA 63329 28 100.0 32 ............................ CAGCGGCTCTATGGAGCGATGTACACTAATAA 63269 28 100.0 35 ............................ CCAGTCGCTCAGTAGCGAGTTAAGTTTCAGTTTCA 63206 28 100.0 32 ............................ TCTTATCATTTTTATGATGCAGTGACACGCTT 63146 28 100.0 33 ............................ TAATCCCAAGACCTGAGCAAGTCTTAAAACTGC 63085 28 100.0 32 ............................ AATCTGTCCAGTCTGATGTATTGCCCAGTTTA 63025 28 100.0 32 ............................ TTGGTTTTCATGATACGCGTCACGAAGCAATT 62965 28 100.0 33 ............................ TACTATACCTGATTCTTATTCTGTGAATTATGT 62904 28 100.0 32 ............................ AACTTTTTCGTAATGCAAATTAAGCAGTTCTG 62844 28 100.0 32 ............................ ATACGCATCAAGCAAGTGACATCGCTGATCTG 62784 28 100.0 32 ............................ AATTATATTACAGTTGTGAACAGTCGAGAAAT 62724 28 100.0 32 ............................ TTGGTGCAACATTAGAGATGACCACTTTTGTC 62664 28 100.0 32 ............................ TAGAGGGTTCGTAGTCTTCCACTGAAATAGTC 62604 28 100.0 32 ............................ TGCTTGTTCACGCCCTGCCTGTGGACTAAAGT 62544 28 100.0 32 ............................ ATAAGGCTACCGCTCCACACCCATTCGGTCAT 62484 28 100.0 32 ............................ TGATAAATCTACACCACGATTTTGTAATTCAT 62424 28 100.0 32 ............................ CAGCTGGCAGGCAAAGCAAGCACAGCGTCAGT 62364 28 100.0 33 ............................ TGTTGATGCTCCTATGTCGTATAGCACCCCGTC 62303 28 100.0 32 ............................ AAACAAGTCGATAAGATTATTGAACCACTATT 62243 28 100.0 32 ............................ GACGATTACACGGCTTGAAGTATTTAGCCGAT 62183 28 100.0 32 ............................ AATCAAATATCTGCTGATGAGATAAAACAAAC 62123 28 96.4 32 ...........T................ CACCCAAAGACATTTCAATTCAGTTACTTAGA 62063 28 100.0 32 ............................ CTGCAAATCCTCTGGAGCTGCTGTCCAGTCTG 62003 28 100.0 32 ............................ AAAATAAATGGCTTCTGTAGCGTTAAATCGCT 61943 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 61882 28 100.0 33 ............................ ACTTACTGAGCTTTCAACAGTATTAATCCGTCT 61821 28 100.0 32 ............................ AGAATACTATGACCAGATGAAGCTCATTATGA 61761 28 100.0 33 ............................ CTATTTACCCACCTTTCGTGAGAAGCCTATCGG 61700 28 100.0 32 ............................ ATCGGTCGGTCATGGCGGTAAGCTAATTTTGG 61640 28 100.0 32 ............................ TGTTGATACCTTACGCCTAGAATTCCCCAACG 61580 28 100.0 33 ............................ CATGTTCTCAGTGATAACACGCCCAACCACAAT 61519 28 100.0 32 ............................ AATATCAATATCATGTACAGTTTTCATTAAAT 61459 28 100.0 32 ............................ TAGGCAATGAGCCTGAAGTCAAAACATTCACC 61399 28 100.0 32 ............................ ATAATGAACAAATGAATATTATTCCGCTTGTT 61339 28 100.0 32 ............................ CCTAATTCAATCGATTCAAAACCAAAAATATT 61279 28 100.0 32 ............................ ACTGTAGATTATCAGGAAGACTGGGTAATGTT 61219 28 100.0 32 ............................ CACACACGCACATCATTTCAATAGATTTTATT 61159 28 100.0 32 ............................ TAATAGAACCATCGGTGAGCGGATTAATCAAC 61099 28 100.0 32 ............................ ACTTGATTTAGTAGCTAAGCTTGATGTGTCAA 61039 28 100.0 32 ............................ GCCTTGGTGTTGTCAGTTTTTGAGCAGAACGA 60979 28 100.0 31 ............................ AAAAACCGTTGTGGATAAAATCGCTCCTCTA 60920 28 100.0 32 ............................ TGATGAGTTTGAGTTATACGCCATAAAGCCTG 60860 28 100.0 32 ............................ TCCTTGGTTGGGGCGACGATGACAAGCTCACA 60800 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 60740 28 96.4 0 ..........A................. | ========== ====== ====== ====== ============================ =================================== ================== 59 28 99.9 32 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACTCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //