Array 1 291538-292359 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDO01000010.1 Escherichia coli strain 58-K131-A entry10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 291538 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 291599 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 291660 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 291721 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 291782 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 291843 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 291904 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 291965 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 292026 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 292087 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 292148 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 292209 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 292270 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 292331 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 318059-318940 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDO01000010.1 Escherichia coli strain 58-K131-A entry10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 318059 29 100.0 32 ............................. CAACAAAACGCTGGAAGCCGGAACAGATATCT 318120 29 100.0 32 ............................. CTTATTGAGTTGGCACAGGAATTACATGAGGA 318181 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 318242 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 318303 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 318364 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 318425 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 318486 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 318547 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 318608 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 318668 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 318729 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 318790 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 318851 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 318912 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //