Array 1 854697-855624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015565.1 Pasteurella multocida strain USDA-ARS-USMARC-60224 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 854697 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 854757 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 854817 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 854877 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 854937 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 854997 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 855057 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 855117 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 855177 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 855237 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 855297 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 855357 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 855417 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 855477 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 855537 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 855597 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2081060-2078211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015565.1 Pasteurella multocida strain USDA-ARS-USMARC-60224 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2081059 28 100.0 32 ............................ CACGAGGAAGGGAGAGCCATTAGTATCACTGA 2080999 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 2080939 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 2080879 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 2080819 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 2080759 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 2080699 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 2080639 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 2080579 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 2080519 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 2080459 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 2080399 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 2080339 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 2080279 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 2080219 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 2080159 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 2080099 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 2080039 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 2079979 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 2079919 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 2079858 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 2079798 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 2079738 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 2079678 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 2079618 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 2079558 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 2079498 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 2079438 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 2079378 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 2079318 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 2079257 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 2079197 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 2079137 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 2079077 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 2079017 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 2078957 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 2078897 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 2078837 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 2078777 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 2078717 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 2078657 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 2078597 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2078537 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2078477 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2078417 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2078357 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2078297 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2078237 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //