Array 1 12052-11229 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRU01000008.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3967 NODE_8_length_81813_cov_1.56922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12051 29 100.0 32 ............................. CGCTCGCAGTTCCTCTGGGTGCGACTCGGGGC 11990 29 100.0 32 ............................. CCCTGTTCGGCAAAATCCCGCCACGCTGGTTT 11929 29 100.0 32 ............................. GGGCGACCTCCGTTAAGCGGCGTGGCGCGATG 11868 29 100.0 32 ............................. GACATTGAGGCGCAGCGCTGGCTGATCCGGGG 11807 29 100.0 32 ............................. TGCTTATTGCGGTAAAGAAATCGGGAAAGAGG 11746 29 100.0 32 ............................. TTAGTCGCCAGCTCGCAGCCCAGCGAGGTGAG 11685 29 96.6 32 .............T............... ATCCCAATGATTATCCTGGCAGCCACGGATTA 11624 29 100.0 32 ............................. AAATACTCGTCATCAGCGCACGCTGCTGGTAA 11563 29 100.0 32 ............................. AATATTCCCGATCCCCAGCGGAGTGAGGGCGG 11502 29 100.0 32 ............................. AGGTAGTCGACCAGCTTTTTCCGCATCCCTGA 11441 29 96.6 32 ..................A.......... AGAGGCAGCAGCGTATATCCGTGGCTACGTTC 11380 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 11319 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 11258 29 93.1 0 A...........T................ | A [11231] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTTAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAACAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29194-28189 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXRU01000008.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_3967 NODE_8_length_81813_cov_1.56922, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29193 29 100.0 32 ............................. AAACCCGGTCAGAACCCGTTCAATGGGAAGCA 29132 29 100.0 32 ............................. GCAACTCATCACGATCACTTACAGGTTGGCTA 29071 29 100.0 32 ............................. TACTCATATGGATGCACCTCAACATTTACATC 29010 29 100.0 33 ............................. AAAATCTTTAACTATGTGCTGATGAACAGCGAA 28948 29 96.6 32 ............................A TGATCACAGAACTGACCGGGTACACCATACCT 28887 29 100.0 32 ............................. GTGAATATCTCCTCAGGCTTAGACTTAGCCGC 28826 29 100.0 32 ............................. TTACGTATCTGTCTAACCTGGAATCAATCGCT 28765 29 100.0 32 ............................. CGCACGCATGATGGCGCGATTACTTAATGTCA 28704 29 100.0 32 ............................. TCAACATCCTGAAATGCGACAATGCGCAACCC 28643 29 100.0 32 ............................. TAACTAACCAGATTGCAACTGGCGATGTGATT 28582 29 100.0 32 ............................. CCCCCGCATAAAAACCGGAGGCCGGAGGCCGA 28521 29 100.0 32 ............................. GGTGATTTTTTACGGGGGTTAGTATCATGGTA 28460 29 100.0 32 ............................. AGCAACTTTTACAGCCTTAACAACACGTTAAC 28399 29 100.0 32 ............................. ATTTGGAAAAACGCAAGAGCGAACTGAAATCA 28338 29 100.0 32 ............................. GTCAGCGAGAAACGCACGCCGACACACTCGCA 28277 29 100.0 32 ............................. CACGAGTGGCAAACTGATTTCGACGAAAAACC 28216 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //