Array 1 273-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JRNM01000015.1 Prevotella bivia DNF00650 contig015, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                  	Spacer_Sequence             	Insertion/Deletion
==========	======	======	======	=================================================	============================	==================
       272	    49	  85.7	    28	TCACA.....C....................................T.	GCATTCATACGATTAGTATCCGCATTCT	T,G,A,CAT [251,253,256,259]
       189	    49	 100.0	    27	.................................................	CACTCGTAAAAGCCTACCGTAAGGATG 	
       113	    49	  95.9	    28	...............................................TT	ATAACTTCACTAATAGCTACAGTGTTAT	
        36	    36	  73.5	     0	....................................-------------	|                           	
==========	======	======	======	=================================================	============================	==================
         4	    49	  88.8	    28	GTTGTGATTTGCTTGAAAATTTCTATCTTTGTGGTATCAAACACAACGA	                            	       

# Left flank :   ATGTGGTTCAAATGTGCCACAGTTTACCTGCAAGATTATGAGTACAACATTTAAGGCGGTGGTATATGCCCACCATAAAAAAGCAGATGGCACGTACAATGTGAAGATACGTGTTACACACAACAGGCAACGCAGACACATTGCCACAAACATATTTGTAACCAAAGAGGAGCTGACACGAGGGTTGAAAATAAAATCAGCCAAAGTAAATGATTTGCTTAAAAAGGAGATAACTAAGTACCAAGAGATAACGGCAACTATTCCAACAGCAAAAGCAAGTTGTATGGGGGTGGCAGAGGTTGTGGAGTATATAAGCAATTACGAGCGGACACACTCTGTATTTAACCTTGATTTTATAGAGTTTAGCAGGCAAATAACTGATGAGTACATAAAGGCTGGCAGAGTTGGTACTGCAAAAAGTTACGAGTGTACAATAAAAGCATTAGTACGCTGGCTAAAAAGGGAACACTTATATATAAATGAGATTATGGTGCAGTTCC
# Right flank :  A

# Questionable array : NO	 Score: 2.69
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:-0.5, 7:-0.04, 8:0.6, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGATTTGCTTGAAAATTTCTATCTTTGTGGTATCAAACACAACGA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTGTGATTTGCTTGAAAATATGTACCTTTGTGGTAGCAACAACAACTT with 92% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,-0.30] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-12] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//


Array 1 7871-8070 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JRNM01000108.1 Prevotella bivia DNF00650 contig108, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                                	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	===============================================	==============================	==================
      7871	    47	 100.0	    30	...............................................	AAGTATGTTTGTAAGGATTTATCTTATTAT	
      7948	    47	 100.0	    29	...............................................	GCTTTTGATGGACGTGTAGGCGAAAAAGG 	
      8024	    47	 100.0	     0	...............................................	|                             	
==========	======	======	======	===============================================	==============================	==================
         3	    47	 100.0	    30	GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC	                              	       

# Left flank :   AAATGCTTCTCAGGAGAACTCCGACAAATAGCTTATCCCGAACTATGACATGACTACTTTAGATCGCTTTAGCGAATATCGAATTATGTGGATACTGGTATTTTTCGACCTTCCCACTGAAACGAAGAAAGACAAGAAAGCTTACATAGACTTTCGAAAAACTCTTCAAAAAGATGGATTTACTATGTTTCAGTTTTCCATCTATGTTCGCCACTGTGCTAGTCAAGAGAATGCTGATGTACATATTAAGCGTGTCAAAAGCATACTACCACCTTATGGAAAGATTGGAATAATGTGTATTACCGATAAACAATTTTCCAATATTCAACTCTTTTATGGTAAAAAACCACAAAAGACTTCCACACCTTACCAACAACTTGAACTTTTCTAGAATCAGAAAATCCTCCTTATCTCTATTGATGAGGAGGATTTTTGCCTATCTTTTTATTTTTCTAAGTATCTCTGTAAATAGCTATTATCAAGCATATTACACTGATTAG
# Right flank :  ACTTATCTAGTCGTCGTATCTTCTCCGCTGTTGTGTTTGATACCGTAGAGTCAACTAGCAAGTGCAAAATTATAAAACGTATTTGAAGAATTCACAC

# Questionable array : NO	 Score: 2.67
# 	Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTGTTTGATACCACAAAGATAGAAATTTTCAAGCAAATCACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:68.09%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-3.90,-1.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.64,0   Confidence: HIGH] 

# Array family : NA
//