Array 1 217058-217986 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014618.1 Pasteurella multocida strain Pm-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 217058 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 217118 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 217179 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 217239 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 217299 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 217359 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 217419 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 217479 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 217539 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 217599 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 217659 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 217719 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 217779 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 217839 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 217899 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 217959 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2276956-2278122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014618.1 Pasteurella multocida strain Pm-3 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2276956 28 100.0 32 ............................ ATTTTTCTTTTGCTGTAAAGACAAGCTGATCA 2277016 28 100.0 32 ............................ TGTTTCAAGCGAACGTACAGCAACAGTGACTG 2277076 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 2277136 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 2277196 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 2277256 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 2277316 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 2277376 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 2277436 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 2277496 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 2277556 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 2277616 28 100.0 32 ............................ CAAAAGATTGAATTACATCATCGGCTACAGAT 2277676 28 100.0 32 ............................ GAAGCGGTATCAATTCTGAAAAGAAAAGGAAT 2277736 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2277796 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2277856 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2277916 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2277976 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2278036 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2278096 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //