Array 1 948093-949585 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023315.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4614 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948093 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948154 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948215 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948276 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 948337 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 948398 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948459 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948520 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948581 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948642 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948703 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948764 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948825 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948886 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948947 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 949008 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 949070 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949131 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949192 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949253 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949314 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949375 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949436 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949497 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949558 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965717-967681 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023315.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4614 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 965717 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965778 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965839 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965900 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965961 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 966022 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 966083 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966145 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966206 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 966267 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 966328 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966389 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966450 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966511 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966572 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966633 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966694 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966755 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966816 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966877 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966938 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 967000 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 967103 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967164 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967225 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967286 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 967347 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 967408 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 967469 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967530 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967591 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967652 29 96.6 0 A............................ | A [967678] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //