Array 1 8991-10955 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKJ01000082.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 8991 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 9052 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 9113 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 9174 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 9235 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 9296 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 9357 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 9419 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 9480 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 9541 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 9602 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 9663 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 9724 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 9785 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 9846 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9907 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 9968 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 10029 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 10090 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 10151 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 10212 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 10274 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10377 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10438 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10499 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10560 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10621 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10682 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10743 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10804 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10865 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10926 29 96.6 0 A............................ | A [10952] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-1541 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKJ01000273.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 110 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 171 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 232 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 293 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 354 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 415 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 476 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 537 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 598 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 659 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 720 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 781 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 842 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 903 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 964 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1026 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1087 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1148 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1209 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1270 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1331 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1392 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1453 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1514 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //