Array 1 36996-36631 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTQ01000001.1 Aggregatibacter actinomycetemcomitans serotype e str. SA3096 contig0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 36995 33 100.0 33 ................................. TTACCTGCACCAATCGATTTATTAGTAGTAATA 36929 33 97.0 33 .................G............... TCCCACGTCTGCGCAATATATTTTGAGCAATAT 36863 33 97.0 34 ..............A.................. AAAACGGTGATGATAAATGCGCCGTTTTGCCTGA 36796 33 100.0 34 ................................. ATGACTTTGAATTGTTTTGCAGATCTAGGCAAAA 36729 33 100.0 33 ................................. GATGGTGTACTAAACCTGATGTAATGCTAGTAT 36663 33 78.8 0 ..A....C.C..........A....C.....TT | ========== ====== ====== ====== ================================= ================================== ================== 6 33 95.5 34 GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Left flank : ATGATTTTGAACAGACTGTATTGCCCATTGGTGCAGGGCTACTGTTAGTCGTAAAAAATAACCGTTAACTGTAGATTGGGTTGCGACGTTCTGTTTAATTCAACTTACAAATGCTTTTAGTCACTCCGAAAACCGATTGGTTAAAAACAAAAAGTGCGGTCAAAATCCAAGTCGTTTTTAAAATATACGGAAACTGCAATATATTCCCTGCATTATTCCATCAGGCACATTTTTATTTGGGGAATTTTGTTGGTGCTATCTTTTTTAATAGTATTAACGGCGTACCTTCAGCGATGTGCTTGTTATTCAGTTCGCTAGCCCATGCTTCTCATCAAATTCCTGCAAGCTAGCGATCCTTATTTTCTTTAACAATTTGCAATAGTTAATTCATTTGTATAACGATGACATGCTCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAAGACAGTAAGTAATCTACTGATTTTTCTTGTTTTTTCATATAGGTA # Right flank : ACTTGGTATACGCTTTTTATGAGCATTTAATCGGTTAAAAATATATGAGCTTGTTGCCTAATGGTAGGGCGGCGTTTAACAAAACGCTCTGTGCGAGTTTGATACTCGCCAAGCTCACTATTTATTGCCCTGCACAATTTTATGTAATCCTTTCTCAATTTTATTCAACATACGGGTAATCTCCAAAAAAACACCTCTAAAATCGACCGCACTTTTCCCCATAAATAAAAAAGCTGAATCTCTCTCGAAATCCAGCTTTTCTTTTACCTATTTATTACGCTAATTCAGTGCGTAATTTTTTCGTGACGTCAACCATGACTTTCAGTTGTTCTAGGGTTTCTTTCCAGCCGCGGGTTTTAAGTCCACAGTCTGGATTTACCCATAAACGCTCTTTTGGCACCACTTGTAACGCTTTACGGAGTAAGTGTTCGATTTCGGCGGCGGTTGGGACGCGTGGGCTATGGATGTCGTACACGCCCGGGCCTATGTCGTTCGGGTAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCCATCTTCGGGTGACTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25889-25726 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTQ01000007.1 Aggregatibacter actinomycetemcomitans serotype e str. SA3096 contig0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 25888 33 100.0 31 ................................. CCACGTGATAGTGCGGGCTGAATGCACATAA 25824 33 93.9 33 C...............................A CTACCGGCACCTGGAATTGGTTAGCCAATACCC 25758 33 90.9 0 G...T.......G.................... | ========== ====== ====== ====== ================================= ================================= ================== 3 33 94.9 32 ACAGCCACCTTCAGGTGGCTGTGTGTTGAAACG # Left flank : TTTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGGAGACTCGGAGGGGCAAGCCAGGTTGGGCCGTATTGCGAAGCATTGCTTGGATTATGGCGTACGGGCGCAGTATTCGGTGTTTGAATGTGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTAGCGACTTATGATCCGGATTGTGATAGTTTGCGCTTTTACCACCTAGGCAGCAAATGGCGGCGCAAAGTGGAGCACCACGGGGCGAAGCCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACCCCTGGTTCTCATCAAATTCCTGCTGAGCTAGCGATCCTTGTTTTCTTTAACAATTTGGAATAGTTAATTCATTTGTATAACGACGATATGCCCGTTATACTTATTCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTACTGATTTTTCTTATTTTTTCATATAGGG # Right flank : GGGACTCTGTTACATCTGAACTCTGATACCAACTAAACTAAGCGCTTTATAAAAATAAGGTGCTTTTCTTTTCCCGCATACCAACACAAAACTCCTTGCCCTTCCTCCACAAAATATATAGACTGAGTTCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATTCTGGCGTAGGAAACTAACAGAGAATCATATTTCCTTTCTTTTTCTCTTCTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTCATCGAAAAGGAAAAATTATGCAATATGGTTTTTGTCGCCCTGTGCCGGTAAATGGCGGAGGGCATTATGAGTAAGGTTGCGAGGGTTGACTATCGCTGGTTAGGACAGCGGCGGCGGTGCATGTCGTTTGGTTCATCGGTGACCGTGCAAAATACCTTGAACATGGTTGATATTTATGCCGTATCACTCTAAACCATCCAATGTCAGCTGAAAGCCATTGTGACA # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACAGCCACCTTCAGGTGGCTGTGTGTTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //