Array 1 62627-60079 **** Predicted by CRISPRDetect 2.4 *** >NZ_QECO01000014.1 Vibrio cholerae strain OYP2A12 Vc_OYP2A12_Contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 62626 28 100.0 32 ............................ TTTTTCAAAATACCAAAACAGTCCTGAATCTA 62566 28 100.0 32 ............................ TTTTGGCATGGCGAAGAGTCAGAAGTTTTCGC 62506 28 100.0 32 ............................ TCTCCAGACACGCCATCTTCTTGAATTAATCC 62446 28 100.0 32 ............................ TCACTTAATGAATTTTTTCTTTGCCAGAATTG 62386 28 100.0 32 ............................ ATCCTTTTGCTATCCGTTTGCCATCCATTTGC 62326 28 100.0 32 ............................ TCTTACTGACGAGCAAATAAAGCAGCTTGGTT 62266 28 100.0 32 ............................ AGTCGAGATTTACGCAGGGGTAGCCCGTCTAA 62206 28 100.0 32 ............................ ATTAAATTAAGAGTGCAACATTTTTTAGCATT 62146 28 100.0 32 ............................ AATATAAGCTTCTGGTGCATCATGCAAAAGGC 62086 28 100.0 32 ............................ GGAACTGGAAAAACCCACTTAGCCGTGGGTAT 62026 28 100.0 32 ............................ TCTCTGGCGCATTTGCATGAGCTGTTGCAGTA 61966 28 100.0 32 ............................ TCAAGCAGAAACAAGATCCGACGCATCTCTGG 61906 28 100.0 32 ............................ TTTCTTGGTGTCTAACTCCACTACTGACGGCG 61846 28 100.0 32 ............................ TAACACGCTTCCGGTTTGCACTCGTGCCGGTG 61786 28 100.0 32 ............................ AGATTCACGCGCTACAGACTGAGCGCTCGCCT 61726 28 100.0 32 ............................ AATCACATCGCCAGCCGGAATCATAGGAAGCC 61666 28 100.0 32 ............................ GATAGTACGTTTTGCAAGGTACGCCGCGCTTC 61606 28 100.0 32 ............................ ATCTGGCAGTAATCGCCCATTGCCACGGCCTG 61546 28 100.0 32 ............................ AGTAACCACTAAATACCAAGCCGGATTAAGAA 61486 28 100.0 32 ............................ GCTTTGCGGCTGTTCTTGTATTCGAGCTGACA 61426 28 100.0 32 ............................ TTTGTTCATGCCCAATGCGCCATCAACGGCTT 61366 28 100.0 32 ............................ GTTATCGGCGATTAACGGCGTTGGCGGCTCTG 61306 28 100.0 32 ............................ TAGATGTAGTTATCAGGGTTTAGACCAAATGC 61246 28 100.0 32 ............................ TCTAGCTTTAATAGCAAAGAGTAGCATTGAAC 61186 28 100.0 32 ............................ ATTAGTGGTTAGCTTTTTTTTCGCCCAACGAT 61126 28 100.0 32 ............................ TTCAGCGATAGCGACGGGACTTTTCTCACAAG 61066 28 100.0 32 ............................ TCGAATTGATAACCCATCTTTTCTAAATCTAT 61006 28 100.0 32 ............................ GTTGATATGGATGGATAGGATCGTAAATCCTA 60946 28 100.0 32 ............................ TTTATGTTAAAGCACCCAAATCCATCGCTTTT 60886 28 100.0 32 ............................ AGTTCTAATAACAAAACCGCGCAGTTCGATAG 60826 28 100.0 32 ............................ AAAAATCTGACCTTCCCACAATATTCGGCATT 60766 28 100.0 32 ............................ TAGCATTTGCAAAATGCCTCTGTAGCCTTGCA 60706 28 100.0 32 ............................ TAATGCTCATTTCAATAGTCTTAAAATGCACT 60646 28 100.0 32 ............................ AAAAAATCAGGGAGTGGGGCGCAAGCTTCGCG 60586 28 100.0 32 ............................ TTAATAGCCGTGATCGCCATGCGCCAGATTGG 60526 28 100.0 32 ............................ TTTACGGCATAGTCATATAAAACAAAATCACT 60466 28 100.0 32 ............................ ATTGCCGACTTTGACGCTGCGCTTTTGCTGCG 60406 28 100.0 32 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTT 60346 28 100.0 32 ............................ TTATCTATGATTAAAGACGCTCACGACCGCCT 60286 28 100.0 32 ............................ TGTAAAGCAAGCATGTTTAACGTGCCATTCTC 60226 28 100.0 32 ............................ TTCATCGGTAATCAAGGACACTTTGGGATCAA 60166 28 96.4 32 ...........T................ ATGCCTTTGGATCGTCGTGAAACTTGCGGTGT 60106 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 43 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACCGCGACAGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //