Array 1 33755-34922 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907640.1 Psychrobacter lutiphocae DSM 21542 H140DRAFT_scaffold00019.19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33755 28 100.0 32 ............................ TTGGTGATCAAATAATCCGATTGAACCTTGGT 33815 28 100.0 32 ............................ AACCCCTCAGCGTGGAAGGACAAGCTTATTGG 33875 28 100.0 32 ............................ AATGGACTAAAACAACATGAACAAACAGCTAT 33935 28 100.0 32 ............................ ATTTGCCAGAAGTAATTAGGGTTATGCTCTGC 33995 28 100.0 32 ............................ AAGAAAAGACCAGCACAAATAAATATGATGGT 34055 28 100.0 32 ............................ AATTAATGTAGAACTGGTCATCGACACGCTTA 34115 28 100.0 32 ............................ CTTTGTGCTAGCTGTCTGTACTTTGTCATCTA 34175 28 100.0 32 ............................ AATGATAACTAACTGGAGTAACAGACATGAGT 34235 28 100.0 32 ............................ TTTGACTTAAATGATGAATTAAATTGCTAATG 34295 28 100.0 32 ............................ ATCATTGGTTTATTAACTCGAATAGTTGTATG 34355 28 100.0 32 ............................ TAGTGATATGGATGAAATGTTATTGTTATTCA 34415 28 100.0 32 ............................ TTTTAATTAATGGTCTCTGTTGACTATGAGTT 34475 28 100.0 32 ............................ GTAATCAGATGTTACTATATTCATTGCTATTG 34535 28 100.0 32 ............................ TTGGGTCATTAATGCGTTTGAGTCTGTAAATA 34595 28 100.0 32 ............................ CGTTACTGTTTTATTAAACTCAAACCCTTTTT 34655 28 100.0 32 ............................ AAAGACAAAGCGCAGACAGACTTTAATAACTT 34715 28 100.0 32 ............................ ACAGATGCAATAAGTGTAGGTTTGGGTAAGGG 34775 28 100.0 32 ............................ ATCGAATTACTACTCACTGAACGTAGTGAATT 34835 28 100.0 32 ............................ ATCCATAATCAGACGCTCCATGCTGTCACCAC 34895 28 89.3 0 .........................CTT | ========== ====== ====== ====== ============================ ================================ ================== 20 28 99.5 32 GTTAACCACCGCATAGGTGGCTTAGAAA # Left flank : CCGCTGTCATTAGATAAGCAGGCATTATCTGATTTATTGACTATGACTCCGTATTCGTATCGTGCCAAAGCAGAGAAGCGTGAGGCCTTGTTGGCGTCAACCGAGCGTCAATACTTTGAGACCACAGCGAGGTTTGTGGTGTATGAGTTGGTGAGGTTGTAGTCAAATTTGGTTTGCTTGCCATTGGTAGGTCGTGTTTTATTGTCTAGATATAGTTAGGAAAGGAAAAGTCGTTAGGGGGTTGACCTGGTTAAGCCTGCTGTTGTCGTGCTTGTACTGGGTTGGTTTGTAATTGCTTTGGTTCTTTTTGACTGGAGTTAACTATTTTTGGTTATAGCTTTGGTCTTGACCTTGGTACTGCTTAAAAAACCCTTTTTTTTGGTTGCTTGAATAAAGTTAATAAAATCAATGTGTTATATTCTAGCAAAAAATAAAGGGTAAAAGTGGGTTTATCAGCCTTGAAGCACTGTTGTTACTGGCTTTTTTAAGCTATAATTCTA # Right flank : TAATAGGGTGCGATCCATGCACCGACATCAAATAAGTATTGCGTTAATGGTGCGCACTGTAAAATCTTATCAGCGTGTAGTCTTAGCTTTTTTGATGTGAGTGTGGTCTTGGGGTGCGGTTTAGCCTCGATTGAAGCGGATATACTGGCGTAGCTCATGGCGATGCGGACTGTGGCGAGAGGCGGTGTCGTGGTAGCAGTAACGACTCTGGTCACGGTAGTCCGCACGCCATGAGCAAGACAGATAGTAGCGAAAAGCGAGATTGGCTCCGTTAGTTTATAACGGTTTATTGCTAGTTGTTTATTTGCAGTTGCTCACTATCTGGGTCTGTCGTTATCCCCTAGGATGATGCGCTTCATGCAGCTGCTGCAAGCGAGCAGTGGCGACATGGGTGTAAATCTGTGTAGTGGATAAGTCGCTGTGGCCAAGTAACAGCTGTACGCTACGTAAGTCGGCACCATGATTAAGTAAGTGAGTGGCGAAAGCATGGCGTAAGCTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACCACCGCATAGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 25308-23536 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907624.1 Psychrobacter lutiphocae DSM 21542 H140DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25307 28 100.0 32 ............................ TACGTCTTCCGGCATCTTCTCTCTGTGTGTAG 25247 28 100.0 32 ............................ TCACGGCATACCAACTCAAAACCAAGTTGATT 25187 28 100.0 32 ............................ TTAATCACTTTATGCTTATAATTATATTATAT 25127 28 100.0 32 ............................ TTAATCACTTTATGCTTATAATTATATTATAT 25067 28 100.0 33 ............................ CCCGAACAGCTACCAACTGTTCGAGGGATTCTG 25006 28 100.0 32 ............................ TAACTGTTTATTAATACTACTCCTTGAACCTT 24946 28 100.0 32 ............................ CACAGCAAGCAAATGGGGCAAACACTGCTTGA 24886 28 100.0 32 ............................ TGTTCTATAATTCTCATAATCTATTACTCCCA 24826 28 100.0 32 ............................ TCTACCGTGATGATTTTAGATAGGGTTTCTTG 24766 28 100.0 32 ............................ TCCTGAGGATATAGCTCATACTGAGCAAAGTC 24706 28 100.0 32 ............................ ACTCGCAAGCTGGAACGCTTGGAAAGCGGTAG 24646 28 100.0 32 ............................ AATGCCCCTAGAGTCTTAATAGCTTTCACATC 24586 28 100.0 32 ............................ AGTTTTACGATGCGCTTAGCACAACTACTGTA 24526 28 100.0 32 ............................ AATCGTGTGATAGACCTTATCGAATTCACCTT 24466 28 100.0 32 ............................ TTTGAGGTTGTTGATAGCAATGGTAGTGTCCA 24406 28 100.0 32 ............................ AACGTGGATTTAAAACATGGGCGAGCCTTCCA 24346 28 100.0 32 ............................ ACCTGATTCAGGGCTGTAAGCGACGTTTATTC 24286 28 100.0 32 ............................ AGTATTCATAATTGTTAATATCACAAACTTGG 24226 28 100.0 32 ............................ TCAAGCGAATTGGTGGCGATTGCAAATACAGA 24166 28 100.0 32 ............................ AAACGAATAAACACCTTCACTCTCACTATCAT 24106 28 100.0 32 ............................ TATCGACGAGCAAGAACGCATCAAACGCAAGC 24046 28 100.0 32 ............................ GACCAGCATACGAAAAGCAGTCGCTCTAAACC 23986 28 100.0 32 ............................ TTACCCTTAGTTGATATGAATATTATATTCCT 23926 28 100.0 32 ............................ ATGAGTTGATTTTGGTTTGATAGCTTGGAATT 23866 28 100.0 32 ............................ TGCTTTGAATTTAGTGACCTTCACAAAGACGA 23806 28 100.0 32 ............................ CATCTGTTGTTGCTATTACCCAGTCTGTCCAG 23746 28 100.0 33 ............................ TTCAATCAGTGCATTAGACTTTGATATAACAAT 23685 28 100.0 32 ............................ ACACGTCAGCAGGGACTTTGTATTTTTTTAAG 23625 28 100.0 33 ............................ TGCTTAGAAAGTGAATCTAGCTTTGAGAAGTTA 23564 28 96.4 0 ..........................G. | T [23540] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 CTTCACCACCGCACAGGTGGCTTAGAAA # Left flank : CATAAAAGATGTGCCTGATAAAATAGAGGGTTACTTAAGCGTTCATCGCTACCGCTTTAAACCAGTTGAAATACAAGCAAGGTCATTGGCTAAAAAATTAGGAATTAGTTTAGATGATGCGATGGCAACAATCGCTAAACGAAAGCCCGAAAAGCCAGTGCCCTACATTAGGCTAATGAGCGAAACCAATAAATCGCCATATATGCTTAAGGTATTACAACAACCTGCTGACAAACCAACACTGGGAGAGTTTAATACTTATGGTATGAATGGCATGAGTGATAATATCACTGTACCACATTGGTAAAATAGCTTTTATAGTTATAAAACTAGGTAATGACGAATGACCCAAAAAGAGGATGTAAAAAACCCTCTTTTTGACCTATTTAAAAACTTGTAATAGAATCAAAGAGTTATGATATAGTCAAAGAAAGAGGGTAAAAACAGGGTTTTTACCCTCTAAGCATTGTCATAACTCACTTTTTTGAGGTATAATTCCT # Right flank : GCCGTTAAAACCACTTGAAATTAGCCACTGCAATTTAACTTCGAGCATAGCTCTACGTCTTGCGCATCGGGCAAGTATGCCCCACATACTTGCTATTCCTCGCTCACGCAAGGGAAATCCTTTGAATAGGATTTCCAAAGAGTCTAACACCCAGCTAAACTTGATAAAATAAAACCACCGCACAGGTGGCTGGTTGCGTTCGTTTGGATACTCTGTGACCTTTTATGTTGAGGCTTTGAGTGTGAATTGAAGGTGCGGTTTAGCCTCGATTGTAGCGGTTATCCTTGGGTGACCACTGGCTTGCAGTGACTTAGCTAGGTGTGGTCGCTCGAATGTTGGAACATGCCTAGCGAGTAGTCACTGCGCCAGTGGGTGCGCAAGATAATAGCGAAAAGCGAGATTGGCTCTTGTTATATTTGGTTAGGTTTAAAAAAACCTGCCTTGATCTCAAGACAGGTTGTTTGTGATGATAAGTGTTTGGGGGTGGTTTAGGAGGCTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCACCGCACAGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTACCGCACAGGTAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 34534-35534 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907634.1 Psychrobacter lutiphocae DSM 21542 H140DRAFT_scaffold00013.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 34534 36 100.0 30 .................................... TTCAATTTTACTTGAAACATCCTTCTTAGG 34600 36 100.0 31 .................................... TCTGTTGAAGTGTTTACTGTGCGCGTATTAA 34667 36 100.0 35 .................................... TTTTATGGTATCGAGACCGTGTAACACGGTCACAC 34738 36 100.0 32 .................................... ATAATAGTAGAGTGCATTTTCCTCTACAACCT 34806 36 100.0 35 .................................... ATATGTGATGTGCCACCAAACGCACGGTTCAGTAG 34877 36 100.0 33 .................................... CCATGTTGCTCTCGTCGATGCCGAGTGCTTCCG 34946 36 100.0 34 .................................... AGTATTTTTCAAAGTAAATAATATCTATAAGCTT 35016 36 100.0 32 .................................... GTGCCAACCGACGACAGACCCTATGGCAATGG 35084 36 100.0 35 .................................... ATCGTTGTGAAGTCCTCCAACGTCCAGTGGACATT 35155 36 100.0 34 .................................... ATTCTAGTTCCGTCAAATACGTAAATATTTGACA 35225 36 100.0 33 .................................... CATAAGAGTTTAGACGAGCATTATTATATACGT 35294 36 100.0 30 .................................... AATAACTTGTTCTGGTATTGCGCTTTAATT 35360 36 100.0 32 .................................... GAAAGAGCTACTAAATCACCTTTGTCTAGAGT 35428 36 100.0 35 .................................... TCAAATATAAACATAGTTGTTGCATTTATGTTAGG 35499 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 15 36 100.0 33 GTTCTGCACTATGCAGAGGTACGTACCGATTAAGAC # Left flank : ATAGTCAGTATCGCGCCCTCGATTGAGGTGACAACGTGCATGCCGTTCATTTGCTTCAGCTGTGGTGATTCCTTAGCGTATTGATCAATCTCTTTGCGGCCTACGCTATAGTATATCGCACCTGCTTGATAGCGCTTACGACCATAACGCAAGATAGTGGCAACTTGCTTGGCACTAAAGCCACGCTGCGCAGCACGCACATGGGCATGGTGAGTATAACCAAGTTTGATCGCATTTTGATTCATCATCTGCATTCTCCTTAATCCAAACCATTTAAGCGAGTATGTCGGTGTTGATATTAAGTATGCAGCAAATAGTTAAAACTGGCTGATTTGGCAAGCTTGTTGGGATTGTAGTTCGTTTTGTGAAAAAAAGCGCAAAAAAGTAAAAAAAGCGTTAGTGACCTATGGTATACTCAAGACTTGACAGACTTTCGAAATCCGACATCCCTAATTTTGTCCTCTGGACGCTATATGTGGTGTGGCTTTGAAAATGGCAGG # Right flank : CGATTTTTTCAACTAAACTGCTTTTATTCATAAAAGTTCTGCACTATGCATGAGAACAGAAATAGCAAAGCACTGCTTTGCCTGTTCGCAAGGGGAGAGCTGTGCTCGAGTTGTACGTACCGATTAAGACCTTAATTTGACGCTCAATGTCGTCAACACTAAGCGTTCTGCACTATGCATGAGAACAGAAATAGCAAAGCACTGCTTTGCCTGTTCGCAAGGGGAGAGCTGTGCTCGAGTTGTACGTACAGATTAAGGTATGAACACATTTGCATAGTGTGATGGTTTGTCTGTCATGCAGTACACATCAACTAAAGCGGGGTCTGATTTATCAGGTTCCGCTTTTTATTGGCTAAGACTTGTTCATTTTGAGGTGATAGAGAGTTTAATATTATACCTTTTCTGAAAAATAACCTATCTTTGTCAAACTCGCTAAATCTACTACTTGTAGCATTTGCACTCGTTTTCCTCGATATCTTAATTTTCAGATTTGGTATTAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGCACTATGCAGAGGTACGTACCGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 42249-42629 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907634.1 Psychrobacter lutiphocae DSM 21542 H140DRAFT_scaffold00013.13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 42249 37 100.0 31 ..................................... ATTAGAGCTAATTTCTGGGCATTAGTGGCTT 42317 37 100.0 34 ..................................... ATTGCTCAAGGTACGCACGATTGTATTCGGCTAG 42388 37 100.0 30 ..................................... AAACGCTCTTGTTATTTGCTAATTAAACCT 42455 37 97.3 34 ....................................A GTAATACAGTTATATTAGTTTTAGTTATTTAAGT 42526 37 100.0 30 ..................................... AATATTTATTGTTTTTTCAACCTTTCTTAA 42593 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 6 37 99.5 32 GTTCTGCACTATGCAGAGGTACGTACCGATTAAGACT # Left flank : AACCGTTGAACATGAGCCAACAAGGAGGTGAGCGATGTCAAACGTAACCAAACAGCAAGCACCGTTATATGTCTTTGTCTATGATATTAGTAATGATAAAGAGCGCAGCAAGGTAGATGGTGTGCTGCGTGATTATGGCTTTCGGGTGCAAAAGAGCGTCTATGAATGTCATCTAACCCGAGGCGACAAAAAAAGGCTGCTCGATAAGCTAGAGTCTTTGACTATCGAAACGGGGCACATACGCTGCTATGGGGTTAATAGCAAAGTGATAAAGATTGGTGCGCCACCTGAAGATTTAGATGAAGAGTATATTTACTTTATTGAATAGCGGCGTATCTTGTGACCTATTTTGTATAAACTATTTTTTAATCAACAATCAAAAAAGTGAAAAATCCATTGGCGACCTATGATATACTTAACCTCGAACAGCCTTTTGAAATTCGACATCGCTAATTTTGTCCTCTGGACGCTATATGTGGTGTGGCTTTGAAAATGGCAGG # Right flank : TTTTGAAATAGACAATGTCTATTGTCTTTTCGTTCTGCACTATGCATGAGAACAGAAATAGCAAAGCACTGCTTTGCCTGTTCGCAAGGGGAGAGCTGTGCTCGAGTTGTACGTACCGATTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTCTGCACTATGCATGAGAACAGAAATAGCAAAGCACTGCTTTGCCTGTTCGCAAGGGGAGAGCTGTGCTCGAGTTAGATGTATCGATAAAAAATTAGTCACAAAAAACGGAGCCTGATTTATCAGACTCCGTTTTTTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTGCACTATGCAGAGGTACGTACCGATTAAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 27118-26623 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907660.1 Psychrobacter lutiphocae DSM 21542 H140DRAFT_scaffold00039.39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 27117 33 100.0 36 ................................. GTGACTTGCCACGCAACGTCTACTTTTCAGCAAAAA 27048 33 100.0 33 ................................. CAATCAAAGTCTATGTCATCCCACTTCAAGCTT 26982 33 100.0 32 ................................. CATATCATGCTACTTGTTAAGCCGTCATACTT 26917 33 100.0 32 ................................. AATGTCATTATTGATACGCTAGTTTTCACTAA 26852 33 100.0 32 ................................. AAGCCAAAAATGTACAAATCGTACACCTGTCA 26787 33 100.0 33 ................................. ATCTCGCTCTGCAATGTCTAAAAAATGTCTAAT 26721 33 100.0 33 ................................. AGTACAGCGATCATTTACGACACCAGGCGAACT 26655 32 87.9 0 ................A.......-..G.C... | A [26628] ========== ====== ====== ====== ================================= ==================================== ================== 8 33 98.5 33 TTCGCACCCAATCACGGGTGCGTGGATTGAAAC # Left flank : | # Right flank : ATTAAAAGTTTGACAACATCAAGCCACAACAGACACTGCAATTTTAGTTGCACAACAAGATATAGGCTATAAGAAATTTTCTAGAAAACTTGCTGTTTTGACTGGTTACTTGTCCTGTATGGTCAAAGAAATCTAAAATGGTAACCAGCCAATCAAACGCAAGTATTACAAAGGTAGGCTTAGTGAGATTAACGCCGTAAACGTTTAGTATTTCGCTGACGATAAGACTATACTATAATAATAAGGGTTGTTGTGGCCGGTCTCCAACTAGAAAGGAACGTTGGTTAGCTTACCAAGGGTAATCCTGTTCGAATCAGGCAAAGCTGCAACAACCTTTCTACCCTACTGCAACATCAAATACAGCCACATCACCGCCCCATTATTCACAATATGAATGATGATTGGGAGCAATAAAGAGCCTGATTTGGCGCGTGCATAGCTTAGCAATAAAGCCAGTACGAAAATAACGCCCATCTCATACCATTCATATTGTAAATGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCACCCAATCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 13041-15409 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907672.1 Psychrobacter lutiphocae DSM 21542 H140DRAFT_scaffold00051.51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13041 28 100.0 32 ............................ CCTAGCCCTCACTGCTATACAGCAAAGGTCTG 13101 28 100.0 32 ............................ GTTTGAGGTGGTAGCAGACTCTTTTAAACCTA 13161 28 100.0 32 ............................ TCTCGTATTTTCCACTCCTCTTGTTCTAAGAG 13221 28 100.0 32 ............................ CCGCATATCCCTACACATAGGGAGAAGACTAG 13281 28 100.0 32 ............................ CTATAACCGAAGATTCTATCACCAAGTTATAC 13341 28 100.0 32 ............................ AATGCAAGATAGATTAAATTTCTTGCCGATGC 13401 28 100.0 32 ............................ AAGTACAGCAAGCCCTGACGACACAGCAAGAC 13461 28 100.0 32 ............................ CTAAAGCATTTGAAATGAATTCAAATACTTTA 13521 28 100.0 32 ............................ TACTACGATAAGGCAGACCGCCCACTGGTTGA 13581 28 100.0 32 ............................ CTGTGCGTGCAATGCTTCGGCTTGTTGTCGCT 13641 28 100.0 32 ............................ TTATGTAAATGGTCGCCTGTTCTCAAGACAAT 13701 28 100.0 32 ............................ AATAGGATGTTTATCTATATCAACATCTGTTA 13761 28 100.0 32 ............................ TTGCGATAGTTGATCGACATCATGAATTTAAA 13821 28 100.0 32 ............................ CTGACGGCACAGCAGGACACGATACAGCGACA 13881 28 100.0 32 ............................ AAAGACTTAGTTAACAAATATGGGGTAGCGGT 13941 28 100.0 32 ............................ TTAAATAAAAAAAATAAAAAAATAAAAAAGTC 14001 28 100.0 32 ............................ AGCTCTGCTCTAAGCTTATTTTTATTAGTAAA 14061 28 100.0 32 ............................ TATATTTGCTAAAAGATCGGCCCAGCGAGCTT 14121 28 100.0 33 ............................ TATAAGGCTTGATGGAGTCTGTATCTAAATAAA 14182 28 100.0 32 ............................ ATTATTTAACAAGTCATACCGCTGTTTGAGGT 14242 28 100.0 32 ............................ TGCTTGCGCATACTTGCTTTTTCGATAAAGTA 14302 28 100.0 32 ............................ GTGCTTATATTCTTTGTTAAGCTCGTCTAGTA 14362 28 100.0 32 ............................ AACAACTACACGACTAGCCGTTGATACTCATG 14422 28 100.0 32 ............................ ATGAACGGCATTTTTTTCTAAAGCGTCAACAA 14482 28 100.0 32 ............................ AACTGGGTAAAGCTCAGAATGCAACAGGACAC 14542 28 100.0 32 ............................ ACTTAAAGACGAAGAAATTTAAACAAACAAAA 14602 28 100.0 32 ............................ CAATGCGTATAGCGTAGCCTTGGCTTTAGATT 14662 28 100.0 32 ............................ TTATCCAGTATTTAGCAGAGTCGGTTATTGCC 14722 28 100.0 32 ............................ AAACGGCAGTGGATTGTTTTCACCAAATCTGA 14782 28 100.0 32 ............................ TTCAAGGGGGAGACGCAGCAGGGTTAACGTCC 14842 28 100.0 32 ............................ TACGGTATCGTCTACCAATAGGGCTTTTGACG 14902 28 100.0 32 ............................ TACTGTATAGATGCACCTACAAAACCGCCAAA 14962 28 100.0 32 ............................ ACCAATGGTGGAGATTAAAACAGCGACACGCC 15022 28 100.0 32 ............................ TCGAGGGTATTGACAACACATTACCTAGCAGG 15082 28 100.0 32 ............................ TCTGTTTGCTGTCTGATAGACTCATGGCAGCA 15142 28 100.0 32 ............................ TTGTAAAAATGGCGCAATGCAGAATGGTCGTT 15202 28 100.0 32 ............................ TAAGCAGTTAACGCTAATCTTGTGGGGGTGGA 15262 28 100.0 32 ............................ TTGCAGCGCAAGACGCTCTCTTGCTCGTCTGG 15322 28 100.0 32 ............................ TCGCCTTTATAATACCGTTTTTTTGCAATCTC 15382 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.9 32 CTTAACCACCGCACAGGTGGCTTAGAAA # Left flank : TCAATCCGTATCCGCTCTCTACTGTATGTCAAAATTAGGGAAAAATGCAACTTTAATTGTGCTGTTCATCACCGAATCCAAGTGGTAAACCCACCCATCTACTCGCTCAAGGTGTTACAATAACCAGCCTGTTGATAAAGCAACAGCAGGAACCTTTAGTAACACCTTTTCTGAAAAATAACCTATCTTTGTCAAACTCGCTAAACCTACTAATTATAGCATTTGCTCTCGTTTTCCTCGATATCTTAATTTTTAGATTTGGTATAACTATGGTATGAGTAAAATGCACGGTAGTGTCACTGTTCTACATTTTTAAAAATATCATTAAATTGGTTGTGACGAATGACCCAAAAAGAGGAGTAAAAAAAACCCTCTTTTTGTACTATTTAAAAATTTATATTTAAATCAAAGAGTTATAATATAGCTCAAAAAAGAGGGTAAAAACAGGGTTTTTGCCCTCCAAGCTTTGTCATAACTCATTTTTTTGAGGTATAATTCCT # Right flank : CTGTATTCACAAGTTAAAGAGTCCTTAATATGAGATGGATGTGAGCCAACTTAACGAAATTCTCAGCAGAGGTCACAGTAACTTCGAAATCCTTAGCAAGACGACGTGAGTTATTTAGCCAAGCAAAGGTACGTTCAACAACCCAGCGTTTAGGAATAATCTGCCAAGAACCTGCAATCTTAGTTGAGATATCGACAGGTAACTTAAAATCTTGCATCATTTGTTCCTCAAAGGTTCTACGATAACCTGCATCAGCAGATACGGCTTTAATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAACCACCGCACAGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 4-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB907645.1 Psychrobacter lutiphocae DSM 21542 H140DRAFT_scaffold00024.24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 ............................ GATATCATCATGCCGTCATCACTTCAAAATGT 64 28 100.0 32 ............................ AGTAGTCGCCTCTTTCATCGTCTCATTAAGAC 124 28 100.0 32 ............................ TTGTGGGTAAACCGCCTCGATGTTTGCATATA 184 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 CTTAACCACCGCACAGGTGGCTTAGAAA # Left flank : CTTC # Right flank : GAGTCATAGCTTTCATATAAATTCACATACATTGCTGCAAAGTATTTAGCGACCTCTTCACCATAGTCAGATTGAGCATTTTCTAGCATTGTTACAATATCTGTTTGACCAGTATTATTATCTACACGTATCACGTATGGGCGCACTTCTTTAAACGGAGTTAAAAGTATCAGCGCTACAGCACATACTATCGCTAAAGCACACGCACCAAACGCTACTTTCCAAGCAAGATTTTTGCTTTTTTCTAGTTCATCAACTCTACTTTCCTCAAACTCCTTTGCGGCTTTTACAAAATCATTAGATGCTTGACGAGCTGTTACTTTTTTTGGTTTTTTAGGTTTTTCAATTTCTGTATTTTTTTTCTTTGTCTTAAACAACATCACTAGACTCCTGTTTTTCTTGATCTACTTCTGCTTCTGCTTCTGCTTCAGGAATAAAAACATCAACTCCATCTGTAAAACGCTCAACATTCGCTGGTACAAATCCTTTTTGGTTAATCA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTAACCACCGCACAGGTGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //