Array 1 335369-340054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMN010000001.1 Methanofollis sp. W23 Ga0466839_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 335369 32 100.0 34 ................................ AACGGAGGTGTTGGCACTCGCGGCGGAGCTGGCG 335435 32 100.0 32 ................................ CCCAGACCGCGAAAACGGCGCAGAAATCCGAG 335499 32 100.0 34 ................................ CGCATGAATTTCTCAGGATCGCTGTAATCCCCGT 335565 32 100.0 35 ................................ CGGGCGAACCTTCAGGACCTACAGTTCCTGGAGTC 335632 32 100.0 34 ................................ TCAAAAAACGACCCGATCACTCGCACCTGGAAGG 335698 32 100.0 34 ................................ TGGCGCGGCATCAGGACGTAGAGCGCACCAAGGA 335764 32 100.0 32 ................................ CTCTCAGACTGGGTTGAGTGGAAGAAGACGTG 335828 32 100.0 33 ................................ AGGAGCATGTCGGAGAAGTACATGTCTTGCGAT 335893 32 100.0 33 ................................ TGCCGCGAAAGGTCCAAACCAGTGTGTGTCAGG 335958 32 100.0 34 ................................ TGTGATTGGGCGCTGCGCGGCAGTCCGCGCCGGG 336024 32 100.0 34 ................................ TGTGATTGGGCGCTGCGCGGCAGTCCGCGCCGGG 336090 32 100.0 36 ................................ GAGCCTGTTTCGTTTCCGCCGCCGCCAGGATCCCCA 336158 32 100.0 33 ................................ TATGGAGGTTATGACTGGAAGATCGGGTCACAG 336223 32 100.0 36 ................................ TCGCGATCACCCGGGCGTGGTCGGCAGAGAGCCCAT 336291 32 100.0 32 ................................ CGCCGACGACCACGCCTTCGCAAGGGCAGAGT 336355 32 100.0 34 ................................ GAGATCCGGCAGATCACCCAACTCGAAAAAGATC 336421 32 100.0 35 ................................ CTCTGTTCTGTAGCCGAGAATGGTCCGGCGGAACT 336488 32 100.0 34 ................................ GGTTCGGCGGCCCAGTAGTCCATCGACCAAAACG 336554 32 100.0 34 ................................ CAGCGACCCTTGATCGCGTCGTCGGTCCGACATC 336620 32 100.0 35 ................................ GCTTTCAGGCGCCGGGCGCCAGTAGGGCATGCGCC 336687 32 100.0 35 ................................ CAGGATTCAGCCTCTGCACACCAGGCGTCCCTGGA 336754 32 100.0 33 ................................ TCAAAAAACGACCCGATCACTCGCACCTGGAAG 336819 32 100.0 34 ................................ ACCTCGACCTCGTCATCGGCCTTCGTCCCCTGAG 336885 32 100.0 35 ................................ ACGCTCGGCACGAACCGGGGAAAACTCGGAGCAGG 336952 32 100.0 34 ................................ TTTTTCACCCTCCGCACCGGGGAACGTTCCTACC 337018 32 100.0 35 ................................ GTATATCCCTGCTCAATCAATTTCTCGGCGAGATT 337085 32 100.0 35 ................................ CCAGTGGATCGCGAACCACCCCTCATAGGTGCCGC 337152 32 100.0 34 ................................ AGGCCGTCAGTCTCCTGATCGCGGCGGCGAGGTC 337218 32 100.0 34 ................................ TGGCCCCTCCGACAATACTCCTGGAGCAAAATAC 337284 32 100.0 36 ................................ TGAATATTTCAGAAAAGTATATATATCGTATCGGTG 337352 32 100.0 34 ................................ GGCGATCTGCTTGTTGATGTTGTCCAGGGACGCC 337418 32 100.0 34 ................................ TGGAACTGGGTGGAGAAGATCGGCGCGGGCTTGA 337484 32 100.0 36 ................................ CGCTCGTCGAAGTCCTTCGCCTGCGTCCCGTTGACC 337552 32 100.0 34 ................................ GCACAGAGCCAGAGTTGGGACGAAACGACATGAT 337618 32 100.0 35 ................................ CGGGTTGCGGTCGGGTGACGAATCCTCCCAATATG 337685 32 100.0 35 ................................ TGGTCAACAATCGGGATTCTGGGATTGCTCTGCTC 337752 32 100.0 34 ................................ TACATGGACGCGAACCTCTACGACGTCTGGAAAA 337818 32 100.0 33 ................................ GGGTTCTACTGGCTGACCGCCCTGTTCGGAGTC 337883 32 100.0 34 ................................ ACTTCGGCCGGCGACTTGACGCCGCCGTGCTCTT 337949 32 100.0 36 ................................ GGTGTAGGGATCGGGTTCGGAGACTCCATCTGCAGG 338017 32 100.0 33 ................................ TGTGGGGCTAGGATATCCGAAGGGGAACAACAA 338082 32 100.0 35 ................................ CGAACGGATCTATCCGCGCCTCGACGCCGTGCCGC 338149 32 100.0 38 ................................ CCGCTTGAGCCCGGCTCCTGCTCCATGAAAATCGGCAC 338219 32 100.0 35 ................................ GTCGACGCCCGCGACCTCGACGACGCGGCGAAACT 338286 32 100.0 35 ................................ ATTTTAGCCCTATACTCTGCCGTATCCGCTCCAAA 338353 32 100.0 33 ................................ TCTGATCTGGATCTTGGATCAAGTACCCAGATC 338418 32 100.0 36 ................................ TCCAACAGCGGCAACACAGATCTCTCGACCTACGGT 338486 32 100.0 33 ................................ CTGGTCGGGCCCGAATCCGAACGCAGGCGGGCG 338551 32 100.0 37 ................................ TGAGAATAGGGGCGGCCCCACTTTGAGACACCCGAAT 338620 32 100.0 34 ................................ TCCCGCTCAGCAGGCGCCTGGAAAGAATTCAACT 338686 32 100.0 36 ................................ ATGAACCAACTCAACAACGAATCTCTGGACACCAAA 338754 32 100.0 35 ................................ GACGAGATACCGAACCGCAGCCTCGGGGGAGACGC 338821 32 100.0 35 ................................ CATCCTCGCCGAAGTCGGCAGCCGACCACTCCCCC 338888 32 100.0 34 ................................ CGCAGTTTGCCGAGGCCCTCACCGCCCTCGCCCC 338954 32 100.0 38 ................................ AACCACCGCAACCCGAGAGCAGAGCAGGTGATCCGGGA 339024 32 100.0 33 ................................ CAGTATCTGATCCAGCGCCACCTCGCCGAGCGC 339089 32 100.0 33 ................................ GTTTCCGCAGGGCCGCCGCGCCGGGAGAACCTG 339154 32 100.0 36 ................................ TCCCCCTCCTGCCTGCCGCTGGAGGAGCCGGGGGGC 339222 32 100.0 33 ................................ CCGGATCGGGGGGGCCGCGTAATGCGTCGGGGT 339287 32 100.0 34 ................................ GGGGCGGTGAGCTACTCGACGCGGGTCGCAGGGA 339353 32 100.0 36 ................................ AAAGGGTAGCTATGTCGGGATGCGGGGCACTGTGGA 339421 32 100.0 36 ................................ TCGCGAGGGTGACGAGCCCGGGATCCCAGGTCAGAG 339489 32 100.0 35 ................................ CTCGCGCCCCGTATCGCGAGGAGGAGGAAAATCCC 339556 32 100.0 34 ................................ CAGGGCACCCGCGTCGAGGTCGTCGGGGATCTGC 339622 32 100.0 33 ................................ ACCAATGAAGAAGAAAGTCCAAAGAGGGATCGC 339687 32 100.0 35 ................................ CCTCCGCCGCCGGGATCCCCAGATCTCCCTCCTGC 339754 32 100.0 37 ................................ CAAAACCGGACCGTCGTATCGACGAGGAACTGTCCTG 339823 32 100.0 33 ................................ GGCTCCGATCATCTTTTCCAGTTCTTCGGGAGT 339888 32 100.0 34 ................................ TCGAACGGATGACGCGCCCCGTCCAGCGCGCCGC 339954 32 100.0 37 ................................ AGATCGACGGAGTTGATCGACGCGAGAGGGGAGCCGC 340023 32 96.9 0 ...................T............ | ========== ====== ====== ====== ================================ ====================================== ================== 71 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TATGGGCAGAGGGTCCAAAATTCAGTCTTCGAGTGTCTTGTGGACCCCGCTCAGTTTGCACAACTGAAACATTCTTTATGTAGTATCATCGACGAGGAGAAGGACAGTCTCAGGTTTTATTACCTGGGAAAGAACTGGAAGCGTCGGGTTGAGCACTTTGGTGCAAAGGAGGGGTACGACCCAGAAGGATTATTAATCACCTGATCGCGGCGAACCTGGAGCGACCATCTTTTTTCCGGGAGCTTCGCAGGGAAAATGGAGAACTGAAATATACTGTTTGTGGTGGCGAGGAGGCTATATTATTTTTGAGTTGCATCTAATTTTTGGGGGGCGGGTCTGCGCAATGGTTTGGAGAATAGATATTTTGGGCGATGAATAATATTGTCCTGCGTTATTTTGACGAAAACAATATTTGATATCAGGTTGAGAGAGTTGTGATTGGCTTAGATCTCTGTCTCATCTTTGGAAAAATGATGAAGGAGGGGTTTGGGTAATCTGCA # Right flank : TATAGGAGACCCGGACGGGTGGCTTGTATTAGGTGGTCGCACCCTCTATAGTCTCTTCTATTTTCATCCCCCTTGCAGAGGTCAGGACCTTAATTCTAGCGATGCACCTCCTCTCAGGGATCAAATTAGAAAATATTATGGTAATGTATATTCGATGTAAGATTCGTGCCCGATATGGCGTATTATGCTCACACTACAAAAAATCCAGATAAATCCGACTGGCAACCCCTCAAAGCCCATCTGATACACGTTGCAGACCTCGCGTCGGGCTTCGCACAGAATTTCGGTGCCGGGGAGTTTGCATATGCCGGAGGTCTGCTGCACGACCTCGGAAAATATTCACCTGAATTTCAGAGACGCCTGGAAGGTGCCCCCGTCGGTGTCGACCATTCCACCGCCGGCGCACTGGAGGCACGGTCCCGCTACCATCCTGCCTACAGCCGGATCCTGGAATATATTGTCACCGGTCATCATGGGGGACTTCTCAATTATGGGAGCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1833406-1832339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMN010000001.1 Methanofollis sp. W23 Ga0466839_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1833405 29 100.0 32 ............................. AACTGCAGGCGAAACTCAGGGCTCTGAACCGC 1833344 29 100.0 32 ............................. ACCACCCTCCCTGAATTGCAGCAACAACTCTC 1833283 29 100.0 32 ............................. GTCCCTCTCCGGGGCGGGGGGTACGCAGCGGT 1833222 29 100.0 32 ............................. GACGACTCGCCCGCGTCGATCTGGATCGCTCC 1833161 29 100.0 32 ............................. TACGGTGTCCCGACGCCCCAGCCGAGAAGTTC 1833100 29 100.0 32 ............................. AGGCCGGCGTCGACCATCCGGACGACTACATC 1833039 29 100.0 32 ............................. GAGGCTGGGGAGCGTCTGATAAACTGGACCGC 1832978 29 100.0 32 ............................. GCGTAGGATGTGGGCAGGGTCTGTGCTGACGG 1832917 29 100.0 32 ............................. ATGGCGGATTCAGAAAGGGATTCAGAAAGCAA 1832856 29 100.0 32 ............................. CCTAATATCTCCTTGACTCTAGGGATAGTGAC 1832795 29 100.0 33 ............................. GGAGTGATCGGTGATCATGGGGGTGTCGGTCCC 1832733 29 100.0 32 ............................. AACGCGCTCTGTGCGTTAGAGAGGAAAAGGAT 1832672 29 100.0 32 ............................. GAGGCCCCGTGCATGAGGAGCCAAACCACCCA 1832611 29 100.0 32 ............................. TTCAGCCTGTCTAACAGGAAGGTGGACTTGCC 1832550 29 100.0 32 ............................. CCGAACACAGACGACAAGGGAGTCACTCTCAA 1832489 29 100.0 32 ............................. AAGTACAGAATAAACCCGACGATTGCGAGCGT 1832428 29 96.6 32 ............T................ GATTCTCAGTGCTCTACGGGCGGCACGAAACA 1832367 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCACACGCGTGGGGATGAACCG # Left flank : TCCCGACGCTGCCGAAGGTGTCGAGGAACCCGGAGGTGTCGAGGTATACTCCAAACCCGCCCATCGTCATGAGTCCGGTGAGGCCGGCGTAGATGGCGAGGATGACGGCGTAATATTTAATCGCCTCGCCGAGTTCGTCACCTCGTGCGTTCCTGAATGTCTCTACAGGGTCCAGGATGAACCCTCGTACTTGTTCGATGATGTCAGGTGACATGATAGAAATGCAAGGGGTGTGGATTTATCTTTTCCGCGTGAATGCTGGAGAAGAGGGGCGGATATCAAGGTTTGCCAGGATTCTGTGAGAGATCGGTAGCCTCGCGCCATGGTCGAGGGGTAGGGGAGACTGAATCCAGAAGGTTCATCTGATCGCTCTTCTAAAGTGAGACGTAATGACGCCGTGGTCTCTTCTGTTCCCAGGGCATTGTGGTGGTGCCGGGAATCCACGGGGTCATGGGGTCGGGTAGGAAAGAAGGTTCTTTCCGGGGGTCATAACCAGTAGA # Right flank : CTCGGTCGATACGCCTCTACGTCTGACGACCAGTGTCGTGTCATCACTCACATATCCGACCAGGATGCCGCGGATCACACTCTTCACGACAGGACCGCGAGCGGGATCGCCGCTTCCTCGCCGCCCCCCCGATCCCCATCGTGAGGGGTCAGGGGGGTCTCCCCCAGCGCGAGAGAGTGACAACAATGTCTTCGTTTTTCTGTGGGGGCGGCACCGTGGATCGACGTCCCTTCCCGCGCCCTCGCCCCTGGGGCGCGGCTCCCCCTGAGCCCGGGATGACGAGAGGGGCGAGAACATGAAGAGGATAATATCACGACCGCTCTTCACGCGAGGAGAGAGCCCTCTCGTTCTATTGCATCGTGGTGACGACTTTTCGTTCTTGACTCGACACTGGTGTTCCCCCCACGCGTGGGGATGAACCCGCCCTCCTCCCCCACACAAAAGGCCACCCCCCTCATGAAGAAGAGCGTGAGACCACAGGGCACCAGGCCAGAGTACGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1844156-1846074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMN010000001.1 Methanofollis sp. W23 Ga0466839_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1844156 29 100.0 32 ............................. CCGGACGGGTCGCGCCTCAGGGGAGATATCCA 1844217 29 100.0 32 ............................. GAATCTCATCGAGACGCGGGAGGTGAGCGACG 1844278 29 100.0 32 ............................. ATCACCGACGCCGAACGAGAGCGCCGGGTCGA 1844339 29 100.0 32 ............................. CCAGAGGTCCCCCCGAGCGCAGGACGGAAAGA 1844400 29 100.0 32 ............................. TCGTCAGTGAGGAGGTCGAAATAGCCGCTTCC 1844461 29 100.0 32 ............................. GTGCATCGCCGGTGCGGTGGTCAGCGTGAGGA 1844522 29 100.0 32 ............................. AGCTCCTCGCAGACTCTCCTATCTCAATTTTC 1844583 29 100.0 32 ............................. GGGCTTACGCAAACACCATAATTCACCTCAAC 1844644 29 100.0 32 ............................. TCGCTTCAGTGTTCGGCCAGGTGATCGCCCCC 1844705 29 100.0 33 ............................. CAGGCGTACGGCAAATATCTGGATCGCATCAAC 1844767 29 100.0 32 ............................. ACAGTGCCTTTGTGTTGGCCCGTTGTATGGGC 1844828 29 100.0 32 ............................. AACTATTCCGAGGTCTGACCCCGTACGTGACG 1844889 29 100.0 32 ............................. TCAAACGAGGCGCCGCAGTGCGGACAGGTCAG 1844950 29 100.0 32 ............................. GGTATCTTGGTCGCACGCTGACGCCGGGGGAA 1845011 29 100.0 32 ............................. ACATCAGGCGTCACGATGTCGTGCGACGACGC 1845072 29 96.6 32 ............................T GGGGCTCCCGCAGGTCGGGCCGCCCTCACGAG 1845133 29 100.0 32 ............................. ATCCTCTAGAAAGTTCTCGACAGGGTTCTGCG 1845194 29 100.0 32 ............................. CTAATCCCCCCCGCATTGCCTGCACCGTCTCC 1845255 29 100.0 32 ............................. TGCGCGAAATGGATTGAGTTCCCGTTCGGGAA 1845316 29 100.0 32 ............................. CAGGCGCGGCGAAACCAGGCGACAAATGCTCT 1845377 29 100.0 32 ............................. AACATCATCGCTCCAGGGAAGGGCTATGCGTT 1845438 29 100.0 32 ............................. GGGACGTGTGGGATCGGTGGGTGGACCCTATA 1845499 29 100.0 32 ............................. TTCAGGCGCACGTCAATCCCATGCTCCGACGC 1845560 29 100.0 32 ............................. TTCAGGCGCACGTCAATCCCATGCTCCGACGC 1845621 29 100.0 32 ............................. ACGTCCCGCTTCTCTACCAGATCCCGGCTCAA 1845682 29 100.0 32 ............................. ACCAAAATTTCGTATCACGCTCTTGCGTCGCT 1845743 29 100.0 32 ............................. GTATCAGGGCGAACTCATCACGAAGGAGGAAG 1845804 29 100.0 32 ............................. ATTCGCGGCATCTCAGGACTCCGTAACCTCAT 1845865 29 100.0 32 ............................. AACACATCTCCCTCGTCGCCAGGGGTGAACCC 1845926 29 100.0 32 ............................. CCTCATCGCCCCCTTCGTATCGTTTGGGTGGC 1845987 29 96.6 31 ............................A CCCCTCTCCACCTCGCCGCCCATGACGTGAA 1846047 28 79.3 0 ...C.........A..A..A..-.....C | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.1 32 GTGTTCCCCACACGCGTGGGGATGAACCG # Left flank : ACTCTTTGTCCATGAAGTGACATTGCCCTTCAAAAAGATAGTATTTCCCCTGAGAGGAGGGGGCGGGAACGCGGGACGACCGGATTCCAGGCGGAGAGGACGCACGCCGGCGACGGCACGTCTCCAAAAAAAAGCGCACGAGAGAGATATGGACGAAATGATCACGACGCCTCGCCCTCTTCCTCCACGCGCTCTTCTCTGAGGGGCGTCCCGTCCATGCACCGGTCCGCATTCCCGGGTCCACCCGGCATGGACATGAGCACGATTCTTTTCTGCGGCACCTCCAGGTATGGCGGAACCCTCTCATCTCTCCACGGCCCCGAAACGTTGCCAGAGATGAGAGGCGGCGAAGTCAGAAGGTTCATCTCATTGCTCTTCTATAGTGAGATATGATGCCGCAGGGTTCTCGTCTGGTGCGCTGGCGCAGGGGTGCCGGGATCCTCCGGGGTCGAAAGGGGCAGTAGGAAGGAAGGTTCTTTCCGGGGATGATAACGAGTAGA # Right flank : CAGGTCGATGACTCCCCCACCGCAAAAGAGGAGTGCCCCCCCTCCTCCCCGGGCAGACCAGAATGATCATCCACATATAGATCCTGAAAAATTCATCTCATCATTATGTACTGCCAGACCTGCGGCGAGCCCCTCCCTGACGACTCCCTCTACTGCTCCTCATGCGGGAGACGCCTCGGCGCCGCCGTCCTCCAGGCCGATGAAGAGCCCGTCGAATACGCCGGGTTCATCAGACGGTTCGTGGCATATATCGTGGACGCTCTCATCTTCGTCGCAGTATCCTTCCTGCTGATCATGATGGTCTTCATCGTCCTTGGAGCATTCATGGAACCCTCGCAGATCATCTCGCTGCTCATCATGATCGAACCCCTCATCTATATCCTCAGTTTCACCACGTTCTACTTCTACTGCGCCTACCTGGAGAGCTCTCCCCGCCAGGCCACCGTCGGGAAACGGGCCCTCGGGATCGCGGTCACCGACGCCGACGGCGAGCGGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1898798-1898037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMN010000001.1 Methanofollis sp. W23 Ga0466839_01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1898797 29 100.0 32 ............................. GAGTCAGAGCGTTCCGGTATTACGACTCCAAA 1898736 29 100.0 32 ............................. ATGGCGAGGAGGAGGGTGATCAGGACCCCGAG 1898675 29 100.0 32 ............................. CCTATATATGGGCCTATTTCGTAATTCTGAAC 1898614 29 100.0 32 ............................. GTCTCGTCGGGCACCTATGCGTTATCTAATAG 1898553 29 100.0 32 ............................. AACCGAGTCTTCCCGACATCATGACGGCGGAT 1898492 29 100.0 32 ............................. CAATCCTCACAGTAGAAATCACCATCAATCCA 1898431 29 100.0 32 ............................. AAGACCTGGGACCCGGACGAGTCTGTCCAGGT 1898370 29 100.0 32 ............................. CACACCGAGAACCGCGCCCCGGTCTTGATACC 1898309 29 100.0 32 ............................. CTCGCGAATGGGTGGCGCACTCCGCAGACGGG 1898248 29 100.0 32 ............................. ACCTTACTACTTCCTCTCGCCGCATCGATTGC 1898187 29 100.0 32 ............................. TCGCTCCGTGTAAAAGCGGGGCTGGAGGAGAC 1898126 29 96.6 32 ...........C................. ATCAATCTCTACGCTCGGCCAGACTCTGGAAG 1898065 29 69.0 0 ...AC....G.....C....A.AA.T..T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.4 32 GTGTTCCCCACACGCGTGGGGATGAACCG # Left flank : CGGTCGTCTGCGTCGGGACCGCGGTGGTCTCGGCAGGAGTTGTCTGGCCGTCGTCGGCGGCGGGCTGCGGGGTCGTGGTGCACCCGGTGGCGAAGACCAGGCAGAAGACCAGGAGCACTCCTATTATGCTCAAATATGTTCTCATGATGAATCGCGTACGTTTTGGTGAATTTTATGATATATTTTTCGAACTTAGATTCTTTTTAGGTCATTTTTTTGAAAATAGGTCTTTGAAATGTTCTGTTATTTCATCGCCTCCAGCCTCTCCTCGCGCGATGGGCGAGCGAGACTTTTTCGTGGTCCTTGCCTGGTCCAATGGCGTGCGGTCCTCCTCGCCGGCGGAGTGAATTCAGAAGGTTCATCTTCTCTCTCTTCTAAAGTGAGACCTGATGACACCGTGGTCTCTTCTGTGTCTCTGGCATTGTGGTGGTGCTGGAGGTCCGCGGTGTCATGGGGCATGGTAGGAAAGAAGGTTCTTTCCGGGGATGATAAGGTGAAGA # Right flank : CCCGCACCCCTGCAAAACTCCATGCCGCGCGGCCTCTCTCCTCTCCCTCGCGCCCCCGCGCGTTGTCCCTCGTCGCCCTTACCTGGTGCTCCCGATGAGATAGGTGCTATAGGGAACCCTCCTGATGACCTCGACCGCAAGATAACTCAGCACGAGCGTCAGGACAAAGGTCACCGGATAGAAGAGCCAGTCATTCCAGTCAAACCCGAGCCTTGTGAAGACCGGGACGATCGTGCACAAGATGAAGGCATGGACCAGGTAGATCCCGAAGGAATAGCGGCCGATCTTTTCCAGCACGGCCGAGACCTTCGAGCGGTGGGAGACGAAGTGCAGGGCGAGCGCGAGGCAGAGGAGGAAGATGATCACGTAGTACAATGGCGTGAGCGTCGCCGTGAGGACATGCCAGTACGCGCCGGTCACCGGATAGATCTGGGTGATCTCAAAGGAGGGGAAGTAGGTCGGGGCGCAGTTGAGGAGGCCGAGGAGGGTGCCGTAGGGGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2018392-2020130 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMN010000001.1 Methanofollis sp. W23 Ga0466839_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2018392 29 100.0 32 ............................. ATCTCGACAGTAGCACAGGCCCTGGGCCTTAA 2018453 29 100.0 32 ............................. GACCCGGCCCTGCTTGCAGGACGGGAGGATCA 2018514 29 100.0 32 ............................. AGGATATTGTCCTCTGCTGCCTCTACTCCGGC 2018575 29 100.0 32 ............................. TTGGGAGTGACATTCTTCCCATCGCCAAGAGC 2018636 29 100.0 32 ............................. GCAGACCTCCGCGCTGAGGGGATGGTGGTCCG 2018697 29 100.0 32 ............................. CGCCGGGAGATCCGGGAGGCTGGCAGCCTCGA 2018758 29 100.0 32 ............................. GCATATGAATCTGCTCGCCGATGTTCGCATCA 2018819 29 100.0 32 ............................. TCTACGTCGATGTCGTCGTCCTGGGCGGCCGC 2018880 29 100.0 32 ............................. GCGTCTTCGTTCTGTATTTCGGTCTGAAATTT 2018941 29 100.0 32 ............................. ACGCAGAATCGGGCGCTATTATTACCAACTCC 2019002 29 100.0 32 ............................. GTCATTAATTTGATTAAAGTTGCGGGAATTTA 2019063 29 100.0 32 ............................. TTAGGGAGCAGATTTGGATCTACAGTCATCGA 2019124 29 96.6 32 ............................T CAAGATCCGCAATTACCCCGAAGAGGCAATCC 2019185 29 100.0 32 ............................. ATCATCACCACATCATCACCAGGTCATCGATG 2019246 29 100.0 32 ............................. AAAATTGAAATTGAGGCGAGAGAGGAGGCTTC 2019307 29 100.0 32 ............................. AACACTCTCTCTCTCTGGTGCGGGGCACCGAC 2019368 29 96.6 32 ............................T TAGCGCGGTGAGCCGCGCCCAAGTCGTCACCC 2019429 29 100.0 32 ............................. GATGACAGACAATCCCTACCTGGGGAGATACG 2019490 29 100.0 32 ............................. CGATCAGGTACTATCAGAAACGGACAATTGGC 2019551 29 100.0 33 ............................. CAGGGCTATCTGTGGCGCCTGCGGCCCTCCTCC 2019613 29 100.0 32 ............................. TTCTATCAGCGGGGCAGGGAGCGAGATACAGC 2019674 29 100.0 32 ............................. GGTATCTTCCCTGCAAAGGCGAAGACCCATGA 2019735 29 100.0 32 ............................. ATCCCTACGTCGATCCGTGGTCGGATCTGTTC 2019796 29 100.0 32 ............................. AATTTCTGGCAGTTGCCGGGGCCTCCGGGCCT 2019857 29 100.0 32 ............................. ATGCAGCTAATCCGCGACGTCTGCGCCAAGGA 2019918 29 100.0 33 ............................. AACAGCGCCCCCGGGTACTCGTCAATCTCCAGA 2019980 29 100.0 32 ............................. TCCTGCCCCCACCGATCCCAGGCGGCCTGAAG 2020041 29 100.0 32 ............................. TCTGCGTCCCGTCGGTTCTGTGACGCTGTGGA 2020102 29 89.7 0 .........................GT.A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCACACGCGTGGGGATGAACCG # Left flank : ATCTATTTTTATCTCGTCGTCCTGGGCCACCGGACACCCGTCCACAAAGACGATCATGGTGTCAGGGTTCATGCCAAGGCAGAGGAGCGCCTTCTCCCAGGTGTCGCCTTCCTCGCCATGGTAGGTGAGCACGATCCCCTCGCGGGGGAACCGAAGAGTGCATTCCATCGCAAAGGTTATCAGAGCGGCGGACAGATAGTGTTACCGCAACGGGCCGGGGTAGTCTAGTCCGGGAAGGCGGTGGCCTCGAAAGCCACTGGTGCTCGCACCTCGGGAGTTCAAATCTCCCCCCCGGCGCCTTTCAAAGAATGCGCTTTTCTCACCAAGGTTTTTGCTACAGGTCGAAGGCAGAAGATTCATCTGATCGCTTCTCGAAGATCGAGTAGATGATGCAGGGGTCTGGTCTGTGCTGGAGCCGCGCAGGTGCCAGTCAGGATGAACTGCTTCGTCACGGGCCATGGTAGGAAAGAAGGTTCTTTCCGGGGATCATAAGGAGAAGA # Right flank : ACCCTGGTGCATCCATAGATCTCTTCTTCTCCCGATTTCGGTCCCTCACCCCCCCTCATCTATCCACCTCCTCTCCTGCCTCAGCCCCATACAGAACTCCATCACACCCTGAGGCGACACTCATTATGGTTGAAACATAATATCGATTCAATTCGGAATCTGCATATATCAAAAAATCAATTATTGGGCCATGGAGCACCAGACCGACCGCCCATACTATCGCTACTGGGCAAAGACACCCAATGAAGAGGAATCTGCTCCTATCGCACACCTCCTCCCATACCACGCCCTCGACGTCGCGGCGGTCGGGCAGGTCCTGCTCCAGAACGACCCCATTCTCAGGGCGAGGTTCGCCCCCCTCGGGATGGAGGACGAAGACCTCAACGCTTTCCTCTCATTTCTGCTTGCCACCCACGACATCGGCAAGTTCTCCACCCCTGCCTTCCAGGCGATGGCCCCCGAGGTCGTACGACATCTCAGAGACGAGGAGGTCCACCTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2029058-2031038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGMN010000001.1 Methanofollis sp. W23 Ga0466839_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2029058 29 100.0 32 ............................. ATATAATGCGTGACTCTCAGAAGAAATAAACA 2029119 29 100.0 32 ............................. CCGCCTTTGCGGTGGTGGACTCCAGACCCGAA 2029180 29 100.0 32 ............................. TCGCTCAGCGCTGAACTCCAGAGCGAAGTGAA 2029241 29 100.0 32 ............................. TTCTAACTCACGGGATGTTAATGTTGTTTTTT 2029302 29 100.0 32 ............................. AACAACACTTCAACTTTTTTTGATGTGGGATA 2029363 29 100.0 32 ............................. TTTCTTTCCCCATTCTTCAAAATTTTTTTGCA 2029424 29 100.0 32 ............................. TTTAACTCCCCCTTTGACCTAGGGGCCTTATC 2029485 29 100.0 32 ............................. GTACCAACAAGCCCCGATCATCGACGCTGACA 2029546 29 100.0 32 ............................. AGGCAATACGGTGCCAGAGTTGCGGCGCAGAT 2029607 29 100.0 32 ............................. GCGATCTCCTCCTCAGTACTCGACCCTGCAGA 2029668 29 100.0 32 ............................. GGGCACTATTGTTTGGGAGATAGGGGTGAGAC 2029729 29 100.0 32 ............................. AGCAGTCTGGAGGTGCCTCCCCCCCTCCAGTT 2029790 29 100.0 32 ............................. ACCCCTCGCCACAACCCGCACCCCCGGACCCC 2029851 29 100.0 32 ............................. CAGTCGCAGCCTAAACGCCGGCCAAGGGGCCG 2029912 29 100.0 32 ............................. GTAGGTCAGTTCGTCGAGGCGACCCTCAAGAA 2029973 29 100.0 32 ............................. GGGGGGCGAGCGCGTGAGCTGCGACGACTACG 2030034 29 100.0 32 ............................. GTCTCGGCCCAGAGGGTCCGGCGGGCGAGGAA 2030095 29 100.0 32 ............................. AGTGTTGATCGGTGCTTCCCCATCCGGCTTCT 2030156 29 100.0 32 ............................. GCACCCAAACGTTTGAGAACGGCGGCAACACA 2030217 29 100.0 32 ............................. AAACGGGAGAGAGTTAGGGGAGCAACCCCGCG 2030278 29 100.0 32 ............................. TTCTTCATCATAAATTTTTAATTCAGCATATT 2030339 29 100.0 32 ............................. CCCCTCGCGAGGTCCTCTCCCAGGTTGCAGAA 2030400 29 100.0 32 ............................. ATTGCCAGGGCCATCAAGAAGAATCCCAATAT 2030461 29 100.0 32 ............................. TTTTTATTATTCCCCTGCGTGATTTTTATGAC 2030522 29 100.0 32 ............................. TAGGTCCACTCGGGCGCGGCGCGGCGGTCGGC 2030583 29 100.0 32 ............................. GCGGGGATCAACACTGAGCTGCAGACGCGGTG 2030644 29 100.0 32 ............................. GTGAGCGTACCCAGGGCGCTCGTCATCTGTCG 2030705 29 100.0 32 ............................. ATCCACATCTCCACTTCTTCCCTGGTGACTGG 2030766 29 100.0 32 ............................. ACCGAAAAAACGTCTGAAGCGCCGCCTGGACA 2030827 29 100.0 32 ............................. TTGATCGACCCGTCGAGGCCGGTGGTGCCGGA 2030888 29 100.0 32 ............................. GAGACGCTTCTGAGGTCTTCGATCCGATGCGT 2030949 29 100.0 32 ............................. TGGTGTTTGCCGGCGGCGGGGTGTCGGGGTAG 2031010 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 33 29 100.0 32 GTGTTCCCCACACGCGTGGGGATGAACCG # Left flank : ACCATCGACGAGGTGCTCGACGCCGGAGGGCTTGAGATGCCGGCGCCCCCCGAAGGATCTCTGGCACCGGCGATTCCTGAGGAGGACAAATGGGGTCCCTGACCGTCGTCGCCGTCGAGAACGTCCCGCCGCGGCTGCGGGGGCGCCTCGCCCTCTGGCTCGTCGAGGTGCGGGCCGGGGTGTACGTGGGGACGTACTCGGTGCGGGTGCGGGAGATGATCTGGGACCAGGTGCTTGCCGGGATGGAGGACGGGAATGCCGTGATGATCTGGCAGGCACGCAATGACGCGGGGTATGATTTTGTGACCGCAGGGACGAACCGCCGGATCCCAAAGGAGATGGACGGCGTTACGTTTGTTTCATTTCTGCCAGAGGTGGAGGCAGATGATGCACAGTCGTGAGAGGGGGCGACGCACCCTGATGGTGACAGGCGGAAGAGCCTGGCACCGGCGTGAGACGCGATAGAAAGAACTTTCCTTCTGGGGATGATAAGGAGAAGA # Right flank : GTCCTTCTTTCGATTCGTGCTATTTGTTGTGTGGTGTTCCCCACACTCAATACAGGAGAGCAGTTGCATTCACGCGTACGTCCTGAGAAGGTAAGAATTCAGGCTCTGTAAAATCAGGCATGATCCCTGGACTCAGACATAGAGGATGAACATGATCGTGGATTTCTGGGTCGTCTACTGATCTGGGTTCCTCCTCTGGAGCAAGACACGACGCGGGAAGATCATCAAATGGCCGCCCCCACCCATCATGCCGGAGGCGCGCTCCAAACAAGAAAGTATGGGAAGATGGGGGAGGCATGGTCACACCATGAATTGGTGAGGAGTCCTCCAGGGCCCCGCACCAGGATAGCAATAATGGTCTCCCCCATGCATAAAAGAGAGAAAGATAAACCCCAACGACCAACCCCTGTATGGTCGCTCTCCCACACAGGGAGGAGCAGACCATGACACGCATTTCTTCGGGAGGGCGTGGCCCAGAGAAGACACTGACCTTCCCCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACACGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //