Array 1 7814-5200 **** Predicted by CRISPRDetect 2.4 *** >NZ_APIG01000003.1 Listeria monocytogenes SHL007 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7813 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7747 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7681 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7615 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7549 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7483 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7417 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7351 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7284 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7218 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7152 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7086 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7020 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 6954 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 6888 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 6822 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6756 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6690 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6624 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6558 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6492 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6426 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6360 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6294 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6228 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6162 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6096 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6030 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 5964 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 5898 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 5832 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5766 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5700 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5634 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5568 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5502 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5436 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5370 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5304 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5238 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5203,5206,5211] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //