Array 1 14316-15475 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACAD010000006.1 Neisseria flavescens strain N57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14316 35 88.9 30 T.......-.T...........T............. CAAAAATGTTTTAGTAAGTAGCAAAAATGT GA [14319] 14383 36 100.0 30 .................................... TTTTCTTTTCGTGCTTCAAATGTATATGCA 14449 36 97.2 30 ...........T........................ GAATGGGAATATAACACTCACTTTGAAGTA 14515 36 100.0 30 .................................... GGCAGAAGATAAGCTGACACGGCTTAATAT 14581 36 100.0 30 .................................... TTCAACGTGCCTTATATGCGCTTGCAAGGC 14647 36 100.0 30 .................................... TTGCCATGATTTACCTTTTTTACAACATCA 14713 36 100.0 31 .................................... TCTGCGATAAATTAAATATTAAAGCACCTAA 14780 36 100.0 30 .................................... GGCCATAAGCGTTTTACCAGAGCCTGGAAC 14846 36 100.0 30 .................................... TCACGGGAACGGCCGCCGCTGTCCTGTCTG 14912 36 100.0 30 .................................... CCATCGCACATTGCTGGGCGATAAATACTT 14978 36 100.0 30 .................................... TCTGACGGCTTGGTAGCTGTTGCTGCTTGA 15044 36 100.0 30 .................................... ACCTGTTTCAGGCATTGCCGTTCGATTTCG 15110 36 100.0 30 .................................... TGTTCGTGGTGGCGGTGGTGCGGGTCGTGT 15176 36 100.0 30 .................................... CAGCCGACCATCAAATACGCCGTCTGAAAC 15242 36 100.0 30 .................................... TTTGCGGTGTTTCGGGGTCAATTCAAGGCA 15308 36 100.0 30 .................................... GTTTACATATTCGCATGTTTACATGTTTGC 15374 36 100.0 30 .................................... TCCGTCTTACTTGCCATTTAGGACTTATAG 15440 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAACCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : TACCTCAACGGGAAACCCTTATCATGTAAGGGTTTCCCGTTTTATTTTGTCTAAAAAATAGGGCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGTAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTATTTCTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTGGCCGCTGTGGTAACAGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTGTCAGTTACGCTGACTTGAAATGAAGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 126371-136290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACAD010000005.1 Neisseria flavescens strain N57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 126371 33 97.0 34 T................................ AGGCGTGTTTTGATTTGTCTATCAGTGAGCCAAT 126438 33 97.0 34 T................................ GATTGATCGTGTTCAAGAGGTTGCATCTAATCAA 126505 33 97.0 35 G................................ CTGAAGACAAAGGCTATCGCCTGATTCGCACCACC 126573 33 97.0 35 A................................ GTAAGCCAGCAATGCACCTCCTACATAAACATTAG 126641 33 100.0 33 ................................. GAGGCTTCACTACTTCCGCCGTTAGAAGGATTT 126707 33 97.0 34 G................................ CAAAATCGAACACTCGGGAAAATTTAAAACAACC 126774 33 97.0 34 T................................ TAATTCAATGAGCAAACGCTCTCTATTTGAGCGT 126841 33 97.0 33 T................................ CTCAAGGTTCACATCTTTGCTAACTTTCTGAAT 126907 33 97.0 34 T................................ AAAGAATATCACTTATACAAAACAACATACTGAA 126974 33 100.0 34 ................................. CTTAACAAAATCAAAGACAAAGTTTGTGTTGTTG 127041 33 97.0 34 G................................ TGAGATTTTGGACAAGAATCATCATCCATGCCCG 127108 33 97.0 34 T................................ AAATTATTTGAAAGAGAGTGTTTTTGGGTCGACA 127175 33 97.0 32 A................................ TAAAGTGCCTGAGTATGTTGCCGAGTTGGAAA 127240 33 100.0 33 ................................. CCATTCAACTTGACGTCTAATTCCCAAATTTGT 127306 33 100.0 35 ................................. CTGAAATTTTAGACCCTTGGTCTGTATAGCAATTA 127374 33 100.0 33 ................................. AAACGGAAGCTATGAAGGCTCGCTATGAAGGGT 127440 33 97.0 34 A................................ ATTACGGCGGTCAGCGAGAAACAATGCTGGTTGA 127507 33 97.0 33 A................................ ATAACATGAGGCCAAAAAGCGAATGCCGCGGTA 127573 33 100.0 33 ................................. TCGATATTGACCGTTTGGATACAGGTTTCAGCC 127639 33 97.0 33 G................................ CAGCATCCGTAGCGGTACCCTTGAGGAACGTGA 127705 33 100.0 35 ................................. AGCGATTGTCGGGCTGCAAAACTTGGGTGGTTACC 127773 33 97.0 32 A................................ ATATAGCACCGCGATAGGCGCAGAGGCGATGA 127838 33 97.0 35 T................................ AACCAGCGCGACGTTGCCAAATTCGGCGGCTGGCA 127906 33 97.0 35 G................................ GTATCTTGGCGGTGCTTATCCGATATGTTCGGCGA 127974 33 97.0 33 T................................ CTGGCTGGAGTTAAGGGGCTTTACAAGAATTAA 128040 33 97.0 34 G................................ TTCTTCGAGTGCTACTTGGGCTTGCTCTTCGGAA 128107 33 97.0 32 G................................ GTTGCAGCTTGTTCTTCGGTGTACTGATACCA 128172 33 100.0 33 ................................. ATCGTATACTTACTAGTAGTATACAAGTAATAA 128238 33 100.0 33 ................................. TCAGCATCGCCTGAAGTGAAGTCCTCGAACAGC 128304 33 97.0 33 G................................ TCTTCGCGTACTTCTACTTTGTTCATGCGGATA 128370 33 97.0 34 G................................ CTTTCCGTGTACTCCCTGCTATCCCCTGCTTACT 128437 33 97.0 33 T................................ GCATTGTACAGACAGTTTTGTTAAGTTACGCTT 128503 33 97.0 34 G................................ CTGCTTACTGGGTAGATACTGGGTAAGTACACGG 128570 33 97.0 35 T................................ GACAAATACGGTGTCAGAGTCAGTCTGTTGGAAGA 128638 33 100.0 33 ................................. GCTAACAGGGCATTTAGCATATAAACGCGCCCT 128704 33 97.0 34 T................................ TATAGACAATAAAAAATAACCCTTGACTTATAAC 128771 33 97.0 34 G................................ AGGTTAAAGCGATTGTGATAAATGATAAAGACAA 128838 33 97.0 34 T................................ CACCAACGGCAGACGGCTTAACCGGTCGATATGT 128905 33 97.0 34 T................................ GGGATAGGTCGAATTAGGCAAACCAAATATGCAG 128972 33 100.0 33 ................................. AACAATGACACATCACCATGTGCATACAGATGC 129038 33 97.0 33 T................................ TTGTCGGATACATGCCAGAAAGCAAACAGGAAG 129104 33 100.0 34 ................................. CTAGTATCTACCTAGATAGTACCTGTATCTATCC 129171 33 100.0 34 ................................. TGTAAGGACGGCGGAAAGCATTACGGGGACGGTT 129238 33 97.0 32 T................................ GTATAAATCGGTCGTTACAGATAACCACCGCT 129303 33 97.0 32 T................................ CACCGTCCACGCCACGCGCCGAAAAATAAAAC 129368 33 97.0 34 G................................ TTTCGACAAACATAAAATTAAAGAACGGAATAGA 129435 33 100.0 33 ................................. GCTTTACATATAACCGCGTCTTTATCCATTACC 129501 33 100.0 34 ................................. TTATTTTTTTTTCTGCGGATTTTTTAATGCTCCA 129568 33 97.0 33 A................................ CTGCTGCTTGAGTTTGATGTCTTCTTCCACTGC 129634 33 100.0 34 ................................. TTGTCGCCTGCGCGCCTCGGCGGTGCGCTCTTTG 129701 33 97.0 32 T................................ CGACAAGGACTAACTCAAATGGTTTTATTAGG 129766 33 100.0 35 ................................. AGACGGCCGCAAAGCCGCCCTGCCCAGCCCGACCC 129834 33 97.0 34 G................................ GCCATCATGGCCATACGGTTATCTTGATGACCCA 129901 33 97.0 34 G................................ CGATGATAAGCCTGATAAACGTCCAGATGATAAA 129968 33 100.0 33 ................................. GTTAATCGTCCGCCCGAATTGGGCCGTATGGTG 130034 33 97.0 33 T................................ ATGGATTGACCGACAGATACAATACTGGCAACA 130100 33 97.0 33 A................................ TATGAACGAGGAAATGTCTGATTTAGTAGCCTT 130166 33 97.0 33 A................................ TTGACGCAAACCGCCCCGACTTGTCGGACGAAT 130232 33 97.0 36 G................................ GTAGTTTTCAGTAGTCATAACAAGGCATAAAGCATA 130301 33 97.0 33 G................................ TGCTTGCGTAAAAAGTGATAATGGCTGTAATTG 130367 33 100.0 33 ................................. GTATTCGCTTTATTGTTTGGATTGGCAGCTTGT 130433 33 97.0 33 G................................ TTTTGTAGGCGAAGACTTTGCCCGCTCGGGCGA 130499 33 100.0 33 ................................. AAATCTTAAGCCTGAAGATTTTGTACCTACTCT 130565 33 97.0 33 A................................ AACAATGTTACAAAAACACCATCTTTTGTCACT 130631 33 97.0 33 T................................ ACCTTGACCCAGACCTTTGCCAGTTGGTTGAGT 130697 33 97.0 32 A................................ CTGCCTTTTAGGCTTTAGTGATTTAAATAGAT 130762 33 97.0 32 T................................ TCTTTTTTACCGGTAAGTAGATTTCGTGCCGC 130827 33 100.0 33 ................................. CGACTTTGGCGGCAGATAAGGCGGCAAGAAAGG 130893 33 97.0 33 T................................ AGACTACCAAGCCATTGCTGAATGGCTGCAAGA 130959 33 100.0 32 ................................. AATTTATAGTTGACTAGATATAACGTAGGTTA 131024 33 97.0 34 T................................ GTATCGGTAAACGCGGTGCAAATCAGGTTTAAGG 131091 33 97.0 34 T................................ TTTGGCTGCTGACCCATCATTACCGGTTTTGGTT 131158 33 97.0 33 G................................ AAGAAGCCTTGTTTGTAACTATCCATCACGCCT 131224 33 97.0 34 A................................ GGAATAGTGTTGACCGATTGGAACAATATACACT 131291 33 97.0 34 T................................ GGCTCAAGCAGCAGGAAACGCTGCTGCCATAGGG 131358 33 97.0 34 G................................ GCTCTCGCGGCTTTGACTTGTGCCAGCGTCAATG 131425 33 97.0 35 G................................ ATTAACAATAAATACACAATCTTGATATTGCATAA 131493 33 97.0 34 A................................ ATTAAAAAAGATATTTGTAACTATGATGGATATG 131560 33 97.0 34 A................................ AATCCGTCCACACAATACAATTAAGGAAACCGCC 131627 33 100.0 33 ................................. CAAAAAACAGAAAAAATGCAGAAAACAGGAACA 131693 33 97.0 35 A................................ ACCGATATCTTCGATACACGCGAAGAAGTAATTAA 131761 33 100.0 33 ................................. TGAATACGGGTCTAATTCGATAACAGATAGCCC 131827 33 100.0 32 ................................. TTTAATAACTGGGTAGCTCTGATATTCAACCA 131892 33 97.0 33 A................................ TTAATCCGTTTTTGGTCGATACCAAATAAAATA 131958 33 100.0 34 ................................. GTCAAAGCCTCTCATGCGCGTCATCAGCTCCATG 132025 33 100.0 32 ................................. GATTGAATGGTTGAAGACAGGCGAAGGGGCGC 132090 33 100.0 35 ................................. AGTGTAAGGGTCAATCCATACTTGATATTGACTCA 132158 33 97.0 34 A................................ TATTGAATTGGAATTGATTGATGACTTCGGCATG 132225 33 97.0 33 G................................ GCTATATTGAAGGTGTGGCAACAAATATTAAAA 132291 33 100.0 36 ................................. AGTTGTGAATGCCCGATATGGCTATGCCTACATCGG 132360 33 97.0 33 T................................ AGAAATGAGCGCGTGAATAAGTTGGTGGGCGGT 132426 33 97.0 33 G................................ ACAAGCAAAGACGATGCTGCCACTGAGAAAAAT 132492 33 100.0 34 ................................. GATAACTACATTGATTTTAAAACATCATTGTTGA 132559 33 100.0 32 ................................. CAAACCGCAAACCAATTCGTATCATACGCAGG 132624 33 97.0 33 A................................ AGCCGACCGTTATCTTGAATGGGTTAAAAAGCA 132690 33 97.0 33 G................................ CATAAGGCTTTCAGCGATTTTAAAAATAGCACG 132756 33 97.0 33 G................................ TTACTAGGAAATACCGCATTGAGTTATCGTATA 132822 33 97.0 34 T................................ AGTTAGTATCCTAGTATCTATCCGTGTACTAACC 132889 33 97.0 34 A................................ TGGATACCATTAGGCAATTCAGTGCATAAGCGAT 132956 33 97.0 34 T................................ CAATGTATAACGCATAATAAATCCTTGTTTGTAC 133023 33 100.0 33 ................................. GGATAGACACGGTAGGAAGCGGATAGGAACAGG 133089 33 97.0 33 G................................ AAGAGACCTTCGGCTACGATGTCGCAGGTCGTC 133155 33 97.0 35 T................................ AACAATCAGATTACCGTTTGTCTTTTTAATTTTAG 133223 33 100.0 34 ................................. AACACTCAAGCCATGTACAGAAGCCATATCTTGA 133290 33 97.0 34 G................................ CGAATTTACCGCATCAGGCAGCCCAGACCGCCTA 133357 33 97.0 33 A................................ CTTGAGCCGGTCAAAGCGGTAGCTGCCGTCTTC 133423 33 100.0 33 ................................. AGGGCTACACATACATCAAACGCCTGGCGCGCG 133489 33 97.0 32 G................................ TGTTTGGCTGTCGTTGGAGTTTAGCCCACGAA 133554 33 97.0 32 G................................ ATTCCAGTTTGCCAGCAGGGCAATGAGCCAGC 133619 33 100.0 33 ................................. ATCACGCTTACCTGCATGGAGATGTAAGCTTAC 133685 33 97.0 33 T................................ AATATAACAACAATACTGATTATGTAAAAATCA 133751 33 97.0 32 T................................ ACTTGTAGAACTACTCGGCGACGTAGAGGAAA 133816 33 100.0 35 ................................. CTGTAAATATCACATCTGCTCTACCTGAAAACCCT 133884 33 97.0 33 G................................ AACTGGAATATTCATCATTTTCAAATATTCCAA 133950 33 97.0 32 A................................ GTCTTGGACGTTGACAAATGGGCTATACATTG 134015 33 100.0 34 ................................. ATCAATAATGAACCAGTGTGTTTTATATCAATGT 134082 33 100.0 32 ................................. TGCTGTGGGTGTCGCTTTAATTGGTGTGTATG 134147 33 97.0 34 T................................ CTAATACGCCTAAACTAAAAGTCGGGTTTGCTGG 134214 33 97.0 33 A................................ AATCCATTCCCAGCCGCTAATCAGGGCGGCTTT 134280 33 97.0 34 G................................ TGCTTACTGGGTAGATAGCGGATAGTACACGGTA 134347 33 97.0 33 A................................ CTCAACTTGTCAGAAATTTGGAAGAGGCAAAAA 134413 33 97.0 33 A................................ AATAGATGCTAATGTCCGTAGTCTTATAGGGCA 134479 33 97.0 33 T................................ TCACTTAAGTTACTATCTTTGTAAACCCTTGTT 134545 33 100.0 33 ................................. TCATATCTTCAAATCGTCTAGCAAATTGCTGGT 134611 33 97.0 33 A................................ TAGTTATCGGCTTTTATCCCTACCTTACAATCG 134677 33 97.0 35 G................................ GGGAAGTACACGGTTAGAAGCGGATAGATAGCGGT 134745 33 97.0 34 A................................ AACTCCTGTAACTGAGGCAGGATTATCTAGGCTG 134812 33 97.0 33 G................................ ACAAATTGATAATAGTCCAAAAGACTTAGAAAA 134878 33 97.0 33 A................................ GGAATATGAAAAGCAAACTTGATTTACAGACGG 134944 33 100.0 34 ................................. CCACAATGCGAATTTGGCGAATTTGCACAAGCTG 135011 33 97.0 36 G................................ TGTATATAAAGATTCATAATTTAAAGGTAGATTATC 135080 33 97.0 33 G................................ ACTCTACAAAATAAAACGCCTGCTATATAACGA 135146 33 100.0 33 ................................. ACTCTACAAAATAAAACGCCTGCTATATAACGA 135212 33 100.0 33 ................................. AACCCGTATAAGGATGAACACACCGTACAACAG 135278 33 100.0 18 ................................. AAATATAAAACGCCTGTT Deletion [135329] 135329 33 97.0 32 G................................ CGCCGTCCGATTCACGCGCGAAAAAATAAAAC 135394 33 97.0 34 G................................ GTTGACTAACGAAGTTCAGACTGCCGAGGACGAG 135461 33 93.9 35 G............A................... CGTGCCACAGCGCAGCAGCAAACCGCCTTGCAGGC 135529 33 97.0 33 .............A................... TTATGTCATGAAAGACACACAATTTGTGATTAG 135595 33 97.0 34 .............A................... ATAGAGTGCAATAAAAAGACGAGTATAATTTGCT 135662 33 97.0 33 .............A................... ATTAATTCGGAAAAGACACTGCCGGGAAACGGA 135728 33 93.9 33 .......A.....A................... CAGCAGGTCAGCTGCTGACCAATTGCTCAGGTA 135794 33 97.0 33 G................................ TACCATGAAGAAAACTCTCATTGCTCTGTGTGT 135860 33 93.9 33 T............A................... ATGAATTTCTGTTTTCACGCCTGCCCGAAATCC 135926 33 93.9 33 T............A................... CCGAACTTGCGCGTTGAGACCATTCCAGAATAC 135992 33 93.9 33 T............A................... TATCAAACAGAAGAAATCTCAAGGTACTTGGGG 136058 33 97.0 33 .............A................... AAAGTCCATTTAAACCCCCTTTAAACCGGCACG 136124 33 93.9 33 T............A................... AAAGTCCATTTAAACCCCCTTTAAACCGGCACG 136190 33 93.9 35 T............A................... AGATACCGCCTCTGATACTTTATCCAATACCACTT 136258 33 93.9 0 T............................G... | ========== ====== ====== ====== ================================= ==================================== ================== 150 33 97.7 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAATATTCGGTATTCGAATGCGACATCGCACCCGATCAGTGGGTTGTTTTAAAAGATAAACTCTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTATCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGTGCGAAGCCGACGGTAGATGTGTTTAAGGATGTGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAGTGCAGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGTATATTGCGAATGCGGGCGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACCTGATGGAACAAGGCTTTTAAGAGAGGC # Right flank : CTCTGCCACCGTATCTCATGTCTGAGTAAGGAGGAGGGGCTGTATGTTCAAATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGGTTAATAAATGACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGCATGATATCAGTTTGAATTTTTTTAGAATTTCAATATGAAACCCCTAATTTACTATGCCCATTCCGCCCAAGACAAACTCGGTAATCTCTTGTCTTACGAACATTGGCAAACCTTGCAAAGCCATTCGGTCAATGTTGGTGAAATGGCGACGGAGTTTGCTCGGGTATTTGATGCGCAGGAACAGGCCTGTAAGATGGGAAAGTTGCATGACTTAGGGAAATATTTGGAAGCCTTTAATCACCGATTGCATGGCGGCTCTTCAGTCGATCATGC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //