Array 1 143429-142681 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJNK01000017.1 Pseudomonas aeruginosa strain GO33 NODE_17_length_143605_cov_27.334490, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 143428 28 100.0 32 ............................ GCCAGCGACGTGGTCGAGATTGAGCACGTCAC 143368 28 100.0 32 ............................ ATGAAAACCGAACAGACTCCCGCTGACCTGCA 143308 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 143248 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 143188 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 143128 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 143068 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 143008 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 142948 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 142888 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 142828 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 142768 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 142708 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 145-412 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJNK01000035.1 Pseudomonas aeruginosa strain GO33 NODE_35_length_47544_cov_32.197651, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 145 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 205 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 265 28 100.0 32 ............................ TTACAGATCGGGTGCTCTTCCATGGTGAACCT 325 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 385 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCGGCCTCCGCCTGCTTGAGGAAGTCGAGAATCTGCTCTTCGGTAAAACGCTTTTTCACTGCCGTCTCCTGCTCGGAAAACGGACTCTACTAAGTTTGACGTGGTACTGAAATCGGGGGGCAGGTCATTCGGGCCTGGCATGTCG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACTACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9981-9293 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJNK01000035.1 Pseudomonas aeruginosa strain GO33 NODE_35_length_47544_cov_32.197651, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9980 28 100.0 32 ............................ ACAACGCCTTCGAAGACCTGGGCGGCTTCGTA 9920 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 9860 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 9800 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 9740 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 9680 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 9620 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 9560 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 9500 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 9440 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 9380 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9320 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCGCGAAGGTCGTCCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1255-146 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJNK01000069.1 Pseudomonas aeruginosa strain GO33 NODE_71_length_1431_cov_17.029141, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1254 28 100.0 32 ............................ ACCTCGCGCCCTGATCACCCAAGCGTGCGTAT 1194 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 1134 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 1074 28 100.0 32 ............................ CGACCGAGGGGAGAGTCACCAGTCCGGAAAAT 1014 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 954 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 894 28 100.0 32 ............................ AGTTCCCGCTGAGGCTGACCGGGAAATCTGCT 834 28 100.0 32 ............................ CACCAGATCCACGACATCAAAGCTTACTTCGG 774 28 100.0 32 ............................ TTCACTGGCTGCGCATGCGCGGCGAGGTATCA 714 28 100.0 32 ............................ TGACCACGTTGATGCCCGGGTAGCTGCTAAAT 654 28 100.0 32 ............................ GTTTTGAACTCAGGATCGCTCTGCATCATCAT 594 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 534 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 474 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 414 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 354 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 294 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 234 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 173 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : ATTGCAGTTCGGGTCTTTCGTGACCTGTCCCCAGTTTTAGTACCGCTGCCTAGTTAGTAGGCCCTGGGGTTGATATTAATTTTTCCTGCTTCAGCTGCTGCTGGCGAGTTCGCCAACTTGCAGCAAATTCTGCCGGGGTGAGATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //