Array 1 530-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFF01000006.1 Streptococcus mutans strain PKUSS-6 C339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 529 36 100.0 30 .................................... ATGTCCGCTGTGCGCGTAAGCGTCGAATGT 463 36 100.0 30 .................................... TAGCTCCGCCGATTGCTTTTCCGACATTGA 397 36 100.0 30 .................................... GTTTGATTGCTTCAAACTCTTCTGCTGAGT 331 36 100.0 30 .................................... TATAGCACTAATCGACAGCGAAGCGACAAA 265 36 100.0 30 .................................... AGAGCAAGAAAGGATATTGAAGAATGAGTC 199 36 100.0 30 .................................... TGTTACCATAATATTACCTCTTTCTATAAG 133 36 100.0 30 .................................... TGGTTTTGTCGGTAGCGCTCTAAAAGGTGT 67 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAAGCGCTAGAAAGATTGATTTCTAGCGCTTTTTTAGGTATAATATAATTAATTAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATAAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : CAGTTGATTCCGAAAGTGTCAGTCAGTATACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 22290-21000 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBFF01000028.1 Streptococcus mutans strain PKUSS-6 C295, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22289 36 100.0 30 .................................... GGATATTAGACAAGAGACATTCAAGATACA 22223 36 100.0 30 .................................... ATATTTGGGGAAATGTCCCTAATGGTCCAT 22157 36 100.0 30 .................................... GCAAAAGCGAGCTTGGCAACTGTGCAAGAT 22091 36 100.0 30 .................................... AGTGAGTTTGAATCTTGATGGAAAAACACT 22025 36 100.0 30 .................................... CTTGTATATTTCAATTCGATTTCCTTGGTC 21959 36 100.0 30 .................................... TTTTGATGAAATTATTAAAGCAAAACTTTT 21893 36 100.0 30 .................................... TTCAAGCGGCGGAAGCAAAATACGAAGGCT 21827 36 100.0 30 .................................... CATTAAGCATGACAATATCTGATTTTAATA 21761 36 100.0 30 .................................... CCATTCTTCTCCTTTCTATCCTAACGTTGT 21695 36 100.0 30 .................................... CACTATTCAGGAAATTGATTAAAGTCTTTT 21629 36 100.0 30 .................................... TCGCGGCTCAATTCTTCTTGAGTTAAAGAT 21563 36 100.0 30 .................................... ATAAGATTTTTAGCGAGTACCCAACTTATT 21497 36 100.0 30 .................................... TCTTTTCGACTTCTACCAATGACCTGTTTG 21431 36 100.0 30 .................................... AAATAAAAAATTACAAGTCCCGAAAAGGAC 21365 36 100.0 30 .................................... TAGCCTTCCCTTTGTCTGCATTGCCTGTCA 21299 36 100.0 30 .................................... ATATTCCTGTTTTGTTTAATGTTACCTACG 21233 36 100.0 30 .................................... TACATCCAAGCTTGTTGTAAACGGATATAA 21167 36 100.0 30 .................................... ATTGTCTGAAATAATCGCTCACAGCAGTGA 21101 36 100.0 30 .................................... GCTACAAAAAGGGTGAATGCTTTAAAAAGT 21035 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : CAGACCCCTGCCCTGAAAGCTCTTGGTGAT # Right flank : AATAGAATCAAATTCTCCTAAGTCAGTTAAGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAATGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //