Array 1 23518-22888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZD01000029.1 Neisseria meningitidis strain NM2181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23517 36 94.4 30 ........G...A....................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 23451 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 23385 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 23319 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23253 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 23187 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23121 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 23055 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 22989 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 22923 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 99.4 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA // Array 2 25014-24122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMZD01000029.1 Neisseria meningitidis strain NM2181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25013 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24947 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 24881 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 24815 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 24749 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 24684 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 24618 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 24552 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 24486 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 24421 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 24355 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 24289 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 24223 36 100.0 30 .................................... TCCCGACATTGACGGAAAAACCCGAAAGCA 24157 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCCCTTTCTCATTTCGCAGTGCTACAATTTTAAAACCGCAAACCAGTTTGTATCCTA # Right flank : NTAGGCGGGACGGCCGCGGTGGTCTCGAAGGTAACGGGTTCTTTGACGGTTCAGGTATTGTTCGATCGGTTGCCAATCAATCACCTGGTCCAACTTCAATAGCGGGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA //