Array 1 375162-375373 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHCP01000001.1 Actinokineospora spheciospongiae strain CECT 8578 Ga0244608_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 375162 29 96.6 32 ............................G TCCAGGCCGCACCCGGGCTCCCACTGGTCGTA 375223 29 100.0 32 ............................. TACCTGGTCGGCATCCTGACCGCGGTCGCCGG 375284 29 100.0 32 ............................. CCGCTGACCGGCACTCCGCGAAGGAGCACGCC 375345 29 93.1 0 ...........................GG | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : CCGACTGCTTCCGGAAGACGGCCAGGGTGACCGAGTTGAGGCTGAGCGGCAGGTACAGGGTCCACTGCCGCAGTTCCGGCGCCACGTCGGCCACCGCTCGGTGGCGGGCCAGCAGGCCCTTGGCGGCGAACCCGGCGCCGATCGCGGCCAGTCCGGCGAGCACCCGCCTCGGTGTTGAGCTCACGGTGTCGTGCCTCCTCCATCAAACCGCCCGCACGCGCTCGGTCGGGCGGTTCAGCGGTGCCGCTCCTGGTCGTACTCAGTGGAAGCGCCCATGCCTCGAAGAACACGGGCACTGCCCTCGCAGAAGCCTGCCAGGTCGTCCGCTCGCTGTGGGCCCGGGTGCCGGCAGCGCCCCGCCATACTCCTGACCGCCCCGCCACCACCGCGCGCCGAAAATCGTGCCCAACACAGTAAGTAACCAGGGGACTACACTTGCCCGGTTCGGCGCGAAAGTGATGCTAAAATCCACTTCGAGCATCTAAAGGCGCAGGTCAAGA # Right flank : GCGTGGTTCGAGGTCGCGGCCTGCGGTGGTTCTCGGGGCGCTCAGGTCCCGACCGGGTGATCAGACGCGTTGCCGCGATTCTGAATCATCGGGTGGGTTGTGCTCTGTGCTGTGGGGGCGGACCGGGATACGATCATGGTCCGGAGTTCACGTCCGAGGAACGGGAGGCACGCGTCAGGTGCGGGACCGTGGTGGCTGCAGGCTGCGGCGTTCGTCCCGCGACGCGGCGAGATGATGGTTGGCATCAAGATCGAGGCGGTGGAACGGTCGGTCGACGACGTCTTCAGCGAGGACTACCGCTTCACCATTCCGCTCTACCAGCGTCCCTACGCGTGGACGACCGAGCAGGCGGGGGAACTCTTCGACGACCTGGTCGTGGCGGCGTCCGGGGACGCGCCCCTGGAGGAGGTCGATCCGTACTTCCTCGGCAGCATCGTCCTGATCAAGGAGGTGGGGAAGCCCGATTCGCAGGTGGTGGACGGGCAGCAGCGCCTCACCAC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 65913-64967 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHCP01000017.1 Actinokineospora spheciospongiae strain CECT 8578 Ga0244608_117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 65912 29 100.0 32 ............................. CACGGGTGTGTCGCGGTCAACGCCCAGGCGGT 65851 29 100.0 32 ............................. CGGGGCAGGTGCCCGGCCTTGAGGAGGTCGTG 65790 29 100.0 32 ............................. GCCAGGAAGTAGGCGCGCCGGGCGGACTCGGC 65729 29 96.6 32 ............................G CCGGACCCGGCGCAGGTGCGGGAAGCGCTGAC 65668 29 96.6 32 .....A....................... TCCCGCGCGAGGCACAGCAGGCGGCCGCGGGC 65607 29 100.0 33 ............................. TCGTCCTGCTCGTCCGGGGGGGAAGTCGGCGGC 65545 29 100.0 32 ............................. CAGAACGGGCTGTTCAAGCTGACGCGCTGGGA 65484 29 93.1 32 .C..........................T GCCATGCCGGGCCCCGGGGTGTGGATCGGGTA 65423 29 100.0 32 ............................. CCGGTGCGCCGGTCGATTGCGTAGTGGGTCAC 65362 29 100.0 32 ............................. ACCGCCTCGGCGGTCAGGTCGGGGTCGCGGGT 65301 29 100.0 32 ............................. TGCCAGAGTGCCCCGGAACGCATCGGCGGCCC 65240 29 100.0 32 ............................. ACGCTGCCGTTGTGTTCCTTCTGCGCGCACAT 65179 29 100.0 32 ............................. GCCGTCGCCGGGCTCCTGCCGACCCTGGTCAC 65118 29 96.6 32 ............................G GCGCTGCCGCCGTCCCTGCTGCCGCTGCCGTC 65057 29 93.1 33 .................A..........G CCCGAGTGCTTCACCCCACCGGGAGGAGGCCCG 64995 29 75.9 0 AC.....T.A.....C...........AG | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.0 32 GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : GCGGTCGACCTCCACGCCCTGCTGGCAGCAACCCGCACCAACCGGCTCACCCGCTGACACCCCCGCGCCGGGTGCCTCGACAGCGGGCACCCGGCGCGCGCCACCCATCAGCGGATTTTCGAGGCAGAGGCGTACCCGGACCTGTGATGACCTGGGCGGCCCCGCGCCTGACCTCCGCCCCGGTGCGACCCCGACCGATCCTCAACCTCACTTAGCCGACGTGAACTCGGCACCGATCCCACTTTCCGGCCGCACACTCATCGCCCCGCCGCACGGACCGGCTCGTTCAACACCTCGACCCCACGCCGCCCATCGGCACCGACTCCCGCTCAGCCCCCGACCACCGACAGAACCGCCAGTCACAGTCATTACCAGCGCATCCACCCAGCCCACCACCATGGCGAACACAGACAGTGATCTGTCGATTACAACACCTCGTTCCATCGCCAAAAGTGATGCTAAAATCCACTCTGCCCACCTAAACCCCCAGGTCAAGAAGT # Right flank : TAGCCGCCGATCGCCGACCCCGCTGACGCCCCGTCGTCTCCGATACGAGCAGACAACCTGACGGCGAGCGGCTTTCCCGCCCCAGCCCTGCGACCCGCCGACCGAGTGGGCGCTCACCCCTACCAGAGCCGTCTCCCACATCACACCCCCGCTAGTTGTGTTCCGCAACCAATGAACTTATAGTTGCAGATATCAACCGATTGGGGAGGCGACATGATCGCCACGACAACGGCGTCTGACCTGGTCGAGGCGTTGCGCTGGATCGTGCGGGCCGGGCGGGCGGTGCACAGTGCCGACGACGACCTGCACAACGCGCCCGCCGCGCTGCTCGGGTTGTTGGCTCGGGAGGGTGAGCAGCGGATGGGCAGGCTGGCCGGGGCGCTGGACGTCGATCCGTCTGTGGTGAGCAGGCAGGTGGCGATGCTGTGTGCTGCGGGGTTGGTTTCGCGGCGGCCTGACCCGCAGGACGGGCGGGCGAGCCTGTTGGGGTTGACCGACTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 78611-77854 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHCP01000004.1 Actinokineospora spheciospongiae strain CECT 8578 Ga0244608_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78610 29 100.0 32 ............................. TCAAGCTCACGGAGGTCTCGGCATGAGCGGCA 78549 29 96.6 32 ............................T TGCAGTGCCCCGGTCCGGCGGCACGTTCTTGG 78488 29 100.0 32 ............................. TCCACCGCGTCGTCCGCGGCGCCGCCGGTGAC 78427 29 100.0 32 ............................. CGGACGCGGCGCCGCAAGGCGGGGTCGGTGAG 78366 29 100.0 32 ............................. GCGGCGCTCACGTCCGGTTCGCGGCTGTGGTC 78305 29 93.1 32 ........................C...G ACGCTGCCCTGGAACAAGTTCCAGATCGGCGG 78244 29 96.6 32 ............................G TCGCCGCGACGGTCCGCGGCGAGCCGGGAGTC 78183 29 93.1 32 .............A..............G GTCTACCGGGAGCACCTGATCGAGGCCGTAAA 78122 29 100.0 32 ............................. CGGTCCTCGGCGACGGCGGCGGACCGGTCGAC 78061 29 100.0 32 ............................. CGGCCCAGCGCCAGGGACACGGCCTGGGTGTC 78000 29 96.6 32 ............................G AAACGACTCCAGGCCGTCCGGGCATGGGCGCG 77939 29 96.6 29 ............................T GGGACGCCGCCTGCCGCACCGCGATTGCC 77881 28 72.4 0 .....A.....A.AG....AC.A-..... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 95.8 32 GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : AGCCCGCGACATCGCCCAATTCTTCGAACTCCCGGAAATGCTCGCCCTACTCCCCTCCTGACCCCCACACTCGCGCACCCAAGCCCCCACCAATCCCTCGCCAACTTCTCTCCGCAAACCCGACCTCGTGGTCACGCCAGCGGACGCCAAGTGGCGGCGGAAATACACCCGATGCCCGAGCCGACACACAACAGCGCGCAAAGTCGCATCCTCCAGTCGCACAGTGAGGCCGAACTGGTGAACCGGTGCCAGACACCGCTCGCGCGTTGCACACCACTTTCAAATCGACTCGGCCGCATCCAGTGTGATGAACCACGACCAACTGGCCAGCCCGGGCGCGCAAGCAACGCCCACTTGACGCATATGACCGCAAGCTGTGATCACCCCAGCATGCACCGAACCCAACACAGAGAGTGATCATTTCGTTACACTGCACTCAATCCAGTCGAAAAGTGATGCGAAAACCGCCCTCGCTCACCTAAACCCGCAGGTCAAGAAGT # Right flank : ACGACTGCCCCTGACCACCGCGCCCACCCGTTACAGGTGGGCCACGGCGGTACCGTGAAGTGTGATCGTGTGGTTGAACGGACCCTTCGGGGCGGGCAAGACGAGTGCGGCCCGTGAGTTGACCGGGTTGCTGCCGCGAGCGCGGGTCTTCGATTCCGAGGAGGTCGGGTTCATGTTGCGGCACGTGTTGACCGAGCCGGTAGCCGACTTCCAGGACTGGCCCGCGTGGCGGGCGCTGGTGGTGCACACCGCCGCCGAGGTGCTTTCCCAGGTGGGTGGCACGCTGGTCGTGCCGCAGGCGGTGTTGGACCGGGGCTACGCCGAGGAGATCTTCGCGGGGCTTCGCGGGCGCGGGATTCCCGTTGTGCACGTGGTGTTGCACGTCGAACTGGGGGAGTTGGTTCGGCGGATCACCCGGGATGAGGTTGAGGTGGGGGCGGTGCGGTGGCGGTTGGACCACGTCGGACCGTACTTTGAGGCGTTGGGGTGGTTGTGTGGGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 451983-451281 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHCP01000004.1 Actinokineospora spheciospongiae strain CECT 8578 Ga0244608_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 451982 29 100.0 32 ............................. GCATCAACGCACCAGAACGATGTTTCGTTAAG 451921 29 96.6 32 ............................G GCACGGCGGGGACTGGCCATCGGCACCAGCCG 451860 29 100.0 32 ............................. TCGTCTTGCTGGGCCGACAGCAGCGCCGCGAC 451799 29 96.6 32 ............................G TACGCGGCCTGCGTGGCGGAGCTGGCGTTGAG 451738 29 100.0 32 ............................. TCGTAGCTCAGTTCATCCCCGTAGTCGTCGAT 451677 29 100.0 32 ............................. GTCGTCCGCTTACCCTCCAGGGCGCGGTACGA 451616 29 96.6 32 ............................G GCGCGGAAGTGGCGGGACAAGCGGTCGGCTCT 451555 29 100.0 32 ............................. CTCGGCACGGTGATCCCGTTCGAGGTGCGGTT 451494 29 96.6 32 ........................C.... TGGCCTTCCCCGCCGACTCCATGCCCGAGGCC 451433 29 86.2 34 ........T.......T...A.C...... AAGAACCCCTTTGCCCGGCGTCTCCAACAGCACC 451370 29 96.6 32 ..T.......................... GGGGTGGTCGCGCCGTAGGGGACCGACTGCGG 451309 29 79.3 0 ..T........AT........T....G.T | ========== ====== ====== ====== ============================= ================================== ================== 12 29 95.7 32 GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Left flank : GAATCCCAGTACTGCCCCACGTCGAACCGCCCCGACGGCGGCGCCCCCACCGCCTCCCGCCTCTCGGACAGCAGCGACCACAACCCCTCCAGCCCATCAACCCCACCGGGAAAACGACACGACACACCCACGACCGCAATCTTGTCCACCACACGCCGATAGTTCCGGAACCCGACGCCCCCATCCACGCCGCCACAACGGCTCACCCGGATGACCAACCGATCGAGTGACACTTCCCGCTGGAGCCATGTGGGGTCGGGCAAGGTCGTTGGATGCCTCCGACGCCGATGTGAGCCGGGGGCAGGTCGTGCCCGCTTCGCGCGATGGGGCCAAGTGAGCGCACTCGCGTGGCGTGTTCCCCAGTAGTCGGCGGGCACCGCCGAGACCACAAGAAACGTGCTATACACGGAGAGTGGCTATGCCACTACACAAGTTCGAACCTGGGGCAGGAAGTGATGCTAAAACCTGCGTCAGTCACCTAAACGCCCAGGTCAACAAGT # Right flank : TGAAGCCGGTTCGAGCACAAGAACGGGAACCCCCATCCGTCGGGACCGCTCGCGGTAGGTGTGCCTGTCAACCGCTGCGGTACCGGAAGCCGTTCGGCAAGCAGGTCATCCAGTGGCCAGGTCGGGGGGCGACGAACAGCCGAACCCGCTCTCGGAGCCTTTCACCGATCCCCCTCGGGCGCCCTCCTCCCTCCACGAGGGCCACGAGCACGCCCAGCCGATGAGCCGCAGCCGCCTCCCGCGTGCGCGGGACCAACCCGGCCGACCATCTCCACGATCCACCACCGGGTCAACCGTCCGAGCGGTGACGCCGACGGCCCCGTGCGCGGTTGGCCGGGTGAGGGCTCTGCCACCCGCACCTTTCGCCGAACTTGTCGGTCATGATAATCATTGTCAGGTAAATTGTCCCCGCAGATTGGCAGGGCCGCCGTGCCTCTCCTCCCCCCTGGTCGATGGCGGTCCCTGTTCGCCGTCCTGGCCGCCTCGGTCGTGGCGGCCGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCGAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 114991-115203 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHCP01000005.1 Actinokineospora spheciospongiae strain CECT 8578 Ga0244608_105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114991 29 100.0 32 ............................. GCCTGGGGTTTCACCTGGGCACCCGCGCCGGA 115052 29 96.6 33 ..T.......................... GCTCCTGATCGTCACTGCCCCGGCCGCCCACTC 115114 29 96.6 32 ................T............ GTCGGGCGTCCGTTCGATGGCGGCGCCGCGAT 115175 29 82.8 0 ..TT......................TGT | ========== ====== ====== ====== ============================= ================================= ================== 4 29 94.0 33 GTCCTCCCCGCGCAAGCGGGGCTGTTCCC # Left flank : CGAGACCGCCCACCACCTCCTGACCCGTGAACTGGTCACCCTCCTGGTGCCCGTCCGGCCGCGCCCGGCGCTGGCCCCCTCGACCCGCGACGGCTACGCGCTCCTGTTCGGCGCGCACACCATGACGGAGCTGTTCGAGGGCCTGGGCCCGATCTACGTCAGCAGCGCCAACCGCACCGGCCACGCCCCGGCGCCCACGCCCGAAGCGGCTGCCCGGATGTTTCCGCCCACCGTCCCCATCCTGGGCGCCGAGAGCACCCCAGGAGACCGCCGCGCCACCACGACCCTCAAGCTCACCCCGGAGGGTGAACTAACCTTGACCCGCACGGGCGCCCAGGACCACGCGAACGGCGGCCCGGCGGCATACCTGCGGCTGCTGACCGATCGGTGGTGAGAAGGGCTACGGCACCGCGAGGAGGCGCTGCCGCTAAGGTCAGCGTTGAGCCGTGAAAGCGAATGAAAAAAGCCGTTGCGGTTCGGAAGTCCGCAGGTCAACAAGT # Right flank : TGACTGGACTGCGACAGTGCGGGGCGTGCCCCGGTCACTCGGCCGCGGGTGGCCGGTTCGTGCGGATCTCGGTGACCAGCAGGGCGACGTGCAGGGACAGCACCGATTCCGGCGAGTCCAGGGATACACCCAGGACCTGTTCGATCCGCGCCAACTGCTGGTAGTAAGCCGTCCTGGACATGTGCGCCGCCGCAGCGGCGGCGGACTTGTTGCCGCCGTGGGCGCAGTAGTGGCGGAGGGTGTCCATCAGGCGGCTGCCGTGCGCCTTGTCCCTGGCGGCGAGGGCGCCCAGTTCGCGGTCGGCGAAGGCGAGCAGGCGGTCGTCGTCGGCCAGGAGGTGCAGGAGGCCTCGGAGGCGGACGTCCTGGAGGCGGTGGAAGGGTTTCGGTGAGGGGGTGCTCAGGGCGGCTTGGGCGACGTGGGCGGCTTCGGTGAGGCTGCGGCGGGCTTGGCCCACCTCGGTGACCGTGGTGCCCGCCGCCAGGACCACCGGTTGGTGC # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAAGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.90,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 79267-79722 **** Predicted by CRISPRDetect 2.4 *** >NZ_QHCP01000003.1 Actinokineospora spheciospongiae strain CECT 8578 Ga0244608_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 79267 29 96.6 32 ............................A CCCTCGCCATGCTCCGGGGCCTGGCCCACCAG 79328 29 100.0 32 ............................. TCCAGCCACCGGCCTGGGCGGCGTCGGTCGCG 79389 29 100.0 33 ............................. CCGTAGCCGGCCCGGATGTCCTCGGGGGTGGGT 79451 29 96.6 32 ............................C GCCCTCCGCCGGGGACTTCGTGATAGCGAAGG 79512 29 96.6 32 ............................T GACCCCGGAAGAACTGAATGAAGTCGCATTCA 79573 29 96.6 31 ............................T CCGCCTCCCACCCACCCCCTGCCGCGCGCCC 79633 29 82.8 32 .GTT.......A..T.............. TGCAGCAGCGGGCGCGGCCCGTGACACGCGCG 79694 28 75.9 0 A.............-........CCC.GC | T [79705] ========== ====== ====== ====== ============================= ================================= ================== 8 29 93.1 32 CTCCTCCCCGCGCAGGCGGGGCTGTTCCG # Left flank : CCGCCGCCGACCGAAACTACTGGGGTGTCACAGTCGCCGACGACAACCGCACCTTCTACGCGACGTTGGCCACCGCAGGCCGCACCTGGCTCGTCAAGGGCGACCTCCAAACCCGCACCGCCCACGACGTCATCCAGAACGCCGAATGCCCCTCCCTCTCCCCAGACGGCACCCGAGTCGCCTTCAAGAAACGCCAAGGCCGCCTGGGCGCCTGGGTCCTCAACGTCCTCGACCTGGCCACCGGCAAAACCATCGAAATCCCAGCCACCCAAGGCCTGGACGACCAACCCACCTGGCTCGACAACAACAACATCGCCTACGGCGCAGCCCTCCGAAACGCCAAGGTCCCCTCCATCTACGAAGTCCCCGCCGACGGCAGCAAGCCCCCAACCCTCCTCATCCAGGACGCCCAATCCCCCTCCCCCATCACCTGACCCGGAGGCCCGCCGAAAGTGAATGAAAACCGCCACCAAGCCCAATAAAACCGCAGGTCAACAAGC # Right flank : CCTACTTCCGGAACCACGCGCCCTTCACCGCTTTCCCCGTCCCCACCGCTTCCCCCAGCGACACCGGCGCCAACCCCCGCTCCGCCAACCCACCCAGCACCGCCCGAGCCAACCCCTCCCGAGAAAACCCCGGCGCAGGCCCGTCATCCACCCCCACGTCCAGCCCAGCGTGCCCGTCGTGCATCAAGATCACGTCCCCCGCCGAAGCCCCCGCCAACGTCCGCTCAGCCACCTCCCCCACCGGATCGTCCTGCCAGTCGTACCCAGTCCGGTTCCACACCACCGATTCCAGCCCACACCGCCGGATCGCCGCCCACGTGGCAGGTTGCTGCGCCCCGTACGGCGGCCGGAACCACCGCACCGGCGCCCCCAACATCTGCTCCAGCCGTTCCTTGCCCTCCCGGGTCCGTCGCAGCACCTCCCCGGGGGACAACGTCGTCAGCCGCACGTGGTCGATCCCGTGCAGTGCCACCTCGTGCCCGGCATCCACGATCTCCCCC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTCCCCGCGCAGGCGGGGCTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //