Array 1 10174-11642 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMPQ01000043.1 Vibrio parahaemolyticus strain MAVP398 scaffold43.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10174 28 100.0 32 ............................ TAATATGTCGTTCCCTTGGCTGGCGAGCAAAG 10234 28 100.0 32 ............................ ACTCCAAGGAAAGTTAGCGCGGTAAAGTCTCC 10294 28 100.0 32 ............................ GTTGCAGAATTGTTTGCGGCTGGTATTTTTTC 10354 28 100.0 32 ............................ TTTATCGAATAATCCCATTAATGGCGACCTCT 10414 28 100.0 32 ............................ AACCATCACGATAGAAAGAATAAAGCTCATAT 10474 28 100.0 32 ............................ TGGACCGTGCGAGAGTCAATATTTTTGTGAAT 10534 28 100.0 32 ............................ TTTTCAAAGGCATAAGAGCCATCGTTAAGCTT 10594 28 100.0 32 ............................ AATACAAGGGCATGTATATCGCGTTCTACAAC 10654 28 100.0 32 ............................ AGAATTAAGAGTCGTATAATTGCCATTCGCAT 10714 28 100.0 32 ............................ GCATCAACATCAATAAACGTATTTAGTTTTTC 10774 28 100.0 32 ............................ ACACACGATGGCGGAGAACCTAATTGAGTGGT 10834 28 100.0 32 ............................ AACACCTCTGAAGCGTGGTTTCGCAAGCTCCT 10894 28 100.0 33 ............................ ATAAAGCAACTGTATTCACGCATTCTGTATGCA 10955 28 100.0 32 ............................ AGGCGCAGTTGGTTACGGAATTGCGCCATATT 11015 28 100.0 32 ............................ AGCGGCGAAGCTATGACGCAGCAACAATATGA 11075 28 100.0 32 ............................ ATTAATATTGCAAAGTAAAAACGGGACGGCCT 11135 28 100.0 32 ............................ CATCCCCGATTTCATCAAGGTCAAAGGTTGAG 11195 28 100.0 32 ............................ AATACGGCCAACACTGCGATAAATGAAAAGAC 11255 28 100.0 32 ............................ GCCATGGGAATAGTGAATCACGCAAAAACAAT 11315 28 100.0 32 ............................ AGGATGCGAGATAAAAATACTTTATTACCTTT 11375 28 100.0 32 ............................ AGGATGCGAGATAAAAATACTTTATTACCTTT 11435 28 100.0 32 ............................ TCGATTCAGATTATCAGAATTGGGAGCCGCAT 11495 28 100.0 32 ............................ AGTAGTGCCACCAGAAGGAGAAGAAGCCCCAC 11555 28 100.0 32 ............................ GTGCTGAGGTGTTCGGCGTTCAAGGTGAAGAA 11615 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTAACTGCCATACAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGGCTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCACCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTTAAAATAGGCTTAAAATACATAGAGTTACAATTGATGGTGTTTAACAAGGTAGAAACATGATTTTTATCTTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : AAATCACAGTTTCATCAGCGAGTAGAAGAGCAGCAATTGGAGCTGGATTAAACAAAGGTCCCTTTTAAAGAGCTCACACAAATTCACCTTCTTTAGAAGGTGGTTATATACATAATACATGAGTCTGAATTTATGGTAAGTTTAACTCGCTTAGATCTGTTACAAATAGTAAAGTGTTAATTACTCGTAATGTTGACTCGTCTGGTTTCATAGCATAAGCGCGTTTGTATGATGTTGCGGATAAGTAGGTTTTGCCCTCAACTTCAGCGATTTTGCCAGCGATGATGTTACTGAACCAAGACTCTCGTATGTTTACAGCTTTTGTTAATAGAGTTTTAGTGTTGCTCAAGTCATCTCTATCGAAGGAACAGACCGCAAGAGCTTCGTAATATATAGGAGCATGGAGCTCATCTCTTATACTCAACAAACTATCATACATCTCCTTTAGCTCGTTGTCTGGAATTGCGAACGGCTGGATTGAGTTAAGAATTTTAGCGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //