Array 1 656797-655626 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080463.1 Vibrio cholerae strain ICDC-VC702 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 656796 28 100.0 32 ............................ TCAGAGCGCACTTGTGCGCCCTTGTGATAAGC 656736 28 100.0 32 ............................ CACAGCTGAGGCAGTAGCGATTGCCTTCTTCA 656676 28 100.0 32 ............................ TGAACTGGCAAAGGCATTACTAAAAGATCATT 656616 28 100.0 32 ............................ CTGGGAACAAAGAACAGTCCGTTCCCGTTCAA 656556 28 100.0 32 ............................ AGTCTCGTGAAGTCGCGGAAGTGTGGGTTTCT 656496 28 100.0 32 ............................ AGTCGCTGGTCTTCGGTTAAAAGCTCTTTAAA 656436 28 100.0 32 ............................ TTAAGTACGTCAAACACTCCGTTTGTCTCATC 656376 28 100.0 32 ............................ AGTATCGGTTTCTCCGACCACATTTAATACAC 656316 28 100.0 32 ............................ GCACTTCTGATTTAAATACTAACTCGCCGTAT 656256 28 100.0 32 ............................ TTTGGCTTGCGTTCCGCCATCGAGGCTCACGC 656196 28 100.0 32 ............................ AAGTGGGATGCGCGCCAACTCGAATCTTGCAT 656136 28 100.0 32 ............................ TGTATATTCATTGCTTCAACTTCAAGCATTGA 656076 28 100.0 32 ............................ TTCGACGGATCAACGTAGCTGTAATCAATTTT 656016 28 100.0 32 ............................ ATAAATGACCGCTTTATCTCATCCAATACCAG 655956 28 100.0 32 ............................ AATTATGATTTTCATCACATGTTATCGGTTTT 655896 28 100.0 32 ............................ TCTGCAAGCTTGGTTTGATTTGCGAGCATTTG 655836 28 100.0 33 ............................ AAACAGAGGACTTAGAGTCGTGCAAGAAGTAAT 655775 28 100.0 33 ............................ CTTTTTTGTTCACAATCTCTCGAAACTTTGTTT 655714 28 100.0 32 ............................ ATAATCGCGTGTTGCGCTTCATGTTCCGCGTC 655654 28 92.9 0 ......................G.A... | T [655634] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGGCCTCTCAGCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGCCGTAATTTAAGTGCTGCGAAGCTGCGCCGTTTAATTGCACGAGGGAGTATAAATAAAGAAGGCGAGCAGCGTTATAAAAAGAAGATGCTGAATCAGAGTATTAAAGGTCCATATCTTGATTTACTCAGTAGCTCGACAGGACAAAAATATCGTAAATTCTTTGAATTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCCTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCCTTATATATCTTATGGTTGAAGCTCTCAAAGGTTGAGGGTTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGGTAGCGTTTCTCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACTAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATGCCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGCATGACTCAAGATGGCCGTGACGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2011246-2011098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080462.1 Vibrio cholerae strain ICDC-VC702 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2011245 28 100.0 32 ............................ TATGGAAGCGTCACTCAAGAGAAGGTGATATG 2011185 28 100.0 32 ............................ TTCGCAATGGAAAATGCCAGCGTGCAAACCAT 2011125 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGTTCTGCCGAATAGGCAGCCAAGAAT # Left flank : CATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGAAGAAGTAAGGTTTGTTCGTAATCAGACGATTGGGAAAAACTTTTTGGGATCCAAAAAGCGTCGAATCAAACGCAGTATGGCTAGGGCCGAGTTATTTGGTATTCAACAATCATTACCAGTAACGAATGAAGACCGTGTCATCGATAGTTTTCATCAAATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACCAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCCTTTTGACGAAGACTCTTTTTTAGTTCGGTAGAAACAAAGAGTTACAGTTGTGAAAATAAAAATGGTGTTTTTATCAAGTTGTGACTTTAAGCAAGAATGATCACATGCTTAGTAATTATATTTTATA # Right flank : AGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTATAGGCTTGGTGGTTTTTTGTTTTACAGCTTGTGTTGTGACGGCGGATTGGTTGTGGCCATTTAAGTGTACTAATTCAGACCTGATCTGACAGTTACCCACTTTTCGACTTGGTGCCTGTCAGATTATATCTGGGCTAGATTCTTTTCAGCCCAGATTGATTTCCCATCCTCTAATGTTTCTATCGGCGTTCTGCCACAGCACATTTTTCCTTGATGAGTACGGTGATTGTTGTAGTAGTCCATCCATTCGTCCAGATCTTTCTGCAACTCTTCGATAGAACCATACAGTTTCTTTCTGAATGTCACTTGGTAGAACTCATTCAATATGGTCTTGTGGAAGCGCTCGCAGATACCATTTGTTTGTGGTGACATCGCTTTAGTTTTCGTGTGGTCGATATCATTAATGGCTAGGTAGAGCTGGTAATCGTGCTGCTCAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //