Array 1 128863-131325 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAT01000001.1 Lactobacillus selangorensis strain ATCC BAA-66 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 128863 30 100.0 35 .............................. ATCTATACAGCAATTGCCGGAGCGGACGGAGAAAT 128928 30 96.7 35 .............................A TAACTCTTGCAGAGCTTTCTCGGCACTACGATAGG 128993 30 100.0 36 .............................. TCTGTCACAGTTTGGGGCGACGGGGGAACCGATCTG 129059 30 100.0 35 .............................. CAAGCATTGATTCTTCATCATCTGAAAGCAAGAAA 129124 30 100.0 35 .............................. CCTACTAAGTCGAGAACATAATCGAATTTCATTTC 129189 30 100.0 37 .............................. TCTTGACTGTTCATCGTTTCGATTTCTTTTGTAAACT 129256 30 100.0 37 .............................. AAAGTAATCTCTGGAATTGGGACCGCGTTTAAAACGC 129323 30 100.0 37 .............................. ATGAAAGTTGATAAAACAGCAATCAAGAAGCTGATTC 129390 30 100.0 35 .............................. GCCTCTTTTATAGTTGTGTAATTCTGCATAAGCTT 129455 30 100.0 35 .............................. TTTCTAGTTTGACTTTTTCATCAACCTCAAGTTGT 129520 30 100.0 35 .............................. ACACTTATAACGTTGCAAGTGCTGAACGCTTAGCA 129585 30 100.0 36 .............................. AGCCTAACGGGACCACGGATTTGCGGTTTAAGATGT 129651 30 100.0 36 .............................. TCTGCAACTTCGAAAGTGATTCCGAAAGCGTCCCAG 129717 30 100.0 36 .............................. AAGTATTCTCTGCGTTAGCGGAGCGGGCTCACTCTC 129783 30 100.0 35 .............................. TACCAAGCGCATTTGTATTCTAGTTGAGAACGTAG 129848 30 100.0 36 .............................. CCGTATCGTCCCAATGACGTTGCATCATGATGGCCA 129914 30 100.0 35 .............................. TTCTGCGGTTCGATAATCTTGCTGGTAACATTGCC 129979 30 100.0 38 .............................. AGGTTAGTGTAACTATGCTTCTTAGTCAGGTGGCCGGC 130047 30 100.0 35 .............................. TTCCAAGATGACACAAGGTCGATGTCCCCCGAAAC 130112 30 100.0 36 .............................. TCTTACGCTATCACGCTCAAGCGCCAGCATCGAAAT 130178 30 100.0 35 .............................. GATACGGACGACAATCAGCAGAAACGGATGGGCAA 130243 30 100.0 37 .............................. TAATGTGCGGTGAGATACATGTCTTCATCTGCACTCC 130310 30 100.0 35 .............................. AACCTCAACAACGTTGATGCAACGGGGGCTTACAT 130375 30 96.7 35 ....................A......... TACGCTGCTTCATCTCTTTGCGTCTACCCATTCCG 130440 30 100.0 36 .............................. TCTTCTGCTGATTTTGCTCTATATCCTCGTTACATG 130506 30 100.0 37 .............................. GGTTGTGATGAAATTCAACGCGTTTTGAATTTGAAAA 130573 30 100.0 36 .............................. GGTGGTCACACTGTTTCGGTTGACTGGTCCGGCAAT 130639 30 100.0 36 .............................. CACCCAAAAAATCCCTCTCACCCCAAAAAAATATAA 130705 30 100.0 37 .............................. GTGTGTCCGAAAGCAAATCTTTCAAGATGTCTTCATT 130772 30 100.0 37 .............................. AGTTTTCTTTCTTGGCATCGTGCATCTTGCGAAAATC 130839 30 100.0 36 .............................. CGAGGTGTGACTGTTCCTTGCTCGATCCGTTCAAGC 130905 30 100.0 36 .............................. TTTGGTAAATGCCGTGACAACGTGAATGTTTGATAG 130971 30 100.0 35 .............................. GTTATGGACGGTCGATTGTATCGTATTCAAACACC 131036 30 100.0 37 .............................. GACTTACTAAAAGAGCATAAAACTGGAATTTTAAGAA 131103 30 100.0 36 .............................. GCAAAAGAACGTGAGAAAATCATGGCTGATTTTAAA 131169 30 100.0 36 .............................. AAAATACACCCCGATCCCTTACTTTTTGATAGCGTC 131235 30 93.3 30 A............................C ATGCAAACAAAATTACAATTGGCTGGTCTA 131295 29 90.0 0 ........C..........A....-..... | T,T [131311,131318] ========== ====== ====== ====== ============================== ====================================== ================== 38 30 99.4 36 GTTTTTATTTAAACAATATGGAATGTAAAT # Left flank : TGTTAAGATTCCTGATCAATCTGCCTACACATTAGGCTACATGATTTACTTCTTCGAAGCAGCCGTTGCTGTATCTGGTTACTTGAATGGCATCAATCCATTCAACCAGCCAGGTGTTGAAGCTTACAAGAAGAACATGTTTGCTTTGTTAGGCCGTCCTGGTTATGAAGAATTAACCAACAAGTTGAACGAACGCCTTTCAAAAGAAGACCACGAAAACTTAAAAGCTTAATTTAAAGAACCCAATGAAAGGACCCTCCGGTTGCGGAGGGTCCTTTTTTATGGGGTTGAATTTGGTTTTAATTCGGTATGGAAAGATTAGGAACTGTCGATCGGTAATGCAGTTAAAACAACAGGAAATCGACAGATAGCTTTAAGACTGCCAGATCAATATTAGTGTGTTTTGACATCTATTTTGGTTAAGAAAGCGCTGCTTAAATTTTGCGATCGACAATTATTAGTGATTAAAGTCTGATATAATAGGGGATATTAAAGGTGCA # Right flank : TGTTTTCGTTATAAGAAAACATATGCAAGATTGAGGCTAAAAAAACTAGCGATTAAGGAAGTTTTGTTGTATTCTATGTAAACGGATACATAGATAAAAAGAATATAAATATTAAGTCATTTTGTTCATTTATGAATTTTAATCCTTCATGATTTTATATTTGTTTATTACTTCTTAAAAATATTTGACGAAGCATAATATTGTTTTTATAGTTTAGTTATGTTGAACGTATGTAAACGTTACGCAATGTAAATTCATATTTTTATATGTGCTTTATTCTTTTATTTAAACAACATGGAATGTTACATGCCTTGTTAAGGAGGTGATGCTTTATGCAGATAACAGGAAACGAGGTCAATTATTATTTTGTTTGCAAAAGAAAGTTATGGTTATTTTCACATCAAATTAACTTTGAGTCTGAAAGCGAACGAGTTCAAATCGGCAATGTGATTGACAAAGAGACTTATGATCGTGCGCATAAACAGATTATGGTAGATGGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAAACAATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 140109-140666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQAT01000001.1 Lactobacillus selangorensis strain ATCC BAA-66 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 140109 30 100.0 36 .............................. AACATATTGATCATAGGTAGTGTTGATTGGTTTGAC 140175 30 100.0 36 .............................. GAAGATGTGCAAACGACTATCAACTTGCTGAAGCGC 140241 30 100.0 36 .............................. CTTACTATGATTGATAGTTTTTTGTTGAAGAACCAC 140307 30 100.0 37 .............................. GTCATTAGAGTTGCGCCCATTTCGGTGGAAACAGAGC 140374 30 100.0 35 .............................. TTGTGGTCGGTCAGGAAGTTGAGGGCGACGGGCTG 140439 30 100.0 36 .............................. ATGTTCTTGACTGCGGCCTCGGCCTTCTTCGATAAT 140505 30 100.0 38 .............................. TTGAAATTTGATGACAAAGGCAACTTGGTCATGGATGA 140573 30 96.7 34 ........................A..... TAAGCGCGTCATTGAACGATCCGTTTAGGATCAA 140637 30 76.7 0 .............T..AA..A....C.TT. | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 97.0 36 CTTTTTATTTAAACAATGTGGAATGTAAAT # Left flank : TTCGGGAGATTGATTCACAAGATGTGATTCCAAAATCGGTGTATTTGGAGAACAAAGGAAAAATTGATGATCAATATCGTATTTTGAATCCAGATTATTCCGATAAGAAAGTGGATTGGCGCAAGAAAAACAAGGCAATAGTAGCATTAAAAGATTTCCTAGTGCCAGTGACTCATTTTCAATTTAGTGCTTTGAGAAAAGCAGGGCGCATTGATGAGGATACTTTAGGAAAAGGAAACTTCAGATATACTATTGCGGATACTCACTATGATGATGAGAAAGGTCTTTCAATTGAAAAAGAAAGTAAAGGGGATAATTTTATTTAACTGTCGATGTCAAATATTGTGAAAAATAGGGGAAATCGACAGTTTGTCAAAATGTTGAAATGAATACATTTGACAGCTTGGTCTAAGAAAGGATTACTTTTTTAACGCAAAACAATCAGATCGACAAATCGGTTACTTTGAAGATTGATATATTAGTATCTAATAGGACAATCC # Right flank : TTTTATTGGCAATATAAAGCGGAATTGTAGCAGCTTAAACATCATTTCTGCCATCGGCAAATTTACGGCAGGCAGGACTCTGTTATGGTTGTGCATTTTCTCGCAGTCGTGATATCCTTAAAGTGTGACAGGGTTCTAACAGCCCTGCCAGTTGGAAAATTTTGGTAAACATGATTTTCTGACCTCCTACAGTTAATGAAGCATCTGCCTGTGCAGGTGCTTTTTTTGTTTTGCAGTGGCAACGATTATCAGCGGTCCGCTGATTGCCGTCACCTTTTTGAAGGTTCATTTATTAGGTGCGTGGCTGCCGGTGTGGGGACCATGGAATCGTTCGTTTTTTGCGTTAGGAGCTGATAAAATCAGCTGGTCGATTTTGGCGTTAACGGCCGTAGTCGGAGTATTGGTCGGCATGTACAGCAGTTTCCTATTCGGAAGACAACAGCAAGGTTGATGAATGTGATATCAGATTAAAAAATTGAATTGCGAAGGATTTAAACGGT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATTTAAACAATGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //