Array 1 672829-672556 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050992.1 Chromobacterium violaceum strain FDAARGOS_635 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 672828 29 96.6 32 ............................A GGACCAACCGTGCCCATCTGGAACTAATCGTG 672767 29 100.0 32 ............................. TCATTCCGTCCGCTGGCGGCATCCGCATTGTC 672706 29 100.0 32 ............................. TCGTCGTCAATCTCGGCCACTGCGCGCACCAG 672645 29 89.7 32 ...........GCC............... ATCGGCAGCACATACACCGGCTTGCCCGGGGT 672584 29 72.4 0 ...........GCC......A...TG.TT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.7 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGACCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGTTTCGCCGACGGCAGCCGGCTCACCGCCAACTTCGGCTCCGCGCCGGTCCGCTACGATAAGCAAACCCTGCCGCCGCAAAGCCTGCTGGCCGAGCTGGCCGGCCAGCCGCCCAGGCTGCTGCCAGTTGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCGATGTCGTTTTGCCGGTCGTGGCGCGGCGGTTTGCCATGGCCGGCGAGCGGCATTGCCGAGCGATCGAGATGGTGATTTTTTGAGCGGAAAAATCGGTAGATTTTTGGAGTGGGTTTTTGTCTTTAAAAAAATCAGCATCTTAAAATTGGT # Right flank : CTGCCCGTCTATCGCTTGCTTAATCCACGGCCGTCGCGTTGCCCGATGCGCTTGCGATCGACGCGCCGCGGCTTGCCGTCCGAGGAGGGCGCTTCCTATGCTGCAAGAATCGATGTCAGAGGAATCGCCATGCAGCAGTTAAGAGTGAGTGTTCTGGTTGCCGCGCTGTTTCTCGTCGTCGCCGTGGTGTCCAAGACGCTGGCCAGCTCCGTCACGGAGACCGTGCCGGTGTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGCTGATTTCTCCGCGCTGGCGCTGGCCGGCCATTCTTGCCGGCGTGTGGCTGGCGTCGGCGATATGGGGGATGTCCGCGCATGGCCTGGGGCTGGCCGGCGCGGCGGCGTTCGCGGGGATAGAGGTGGTCAGCGGAGCCGTTGGCTGCTGGGTGGCCGGACTGGGGCGCAACGATCCGGATTCCCCGATCGGCATGGCCTTGCTTCTTTGCGGCGCGGCGCTGGCGTCCTGCCTGGG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 681172-680104 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050992.1 Chromobacterium violaceum strain FDAARGOS_635 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 681171 29 100.0 32 ............................. GCAGGGCCAGACGATGCTGACAGGACGACAAG 681110 29 100.0 32 ............................. GCAAGGAAGGCAGGCGCGAGAAGGCAGGCCAA 681049 29 100.0 32 ............................. TCTGCGATTCTCTCCACCGCGTCCGGCTTGGG 680988 29 96.6 32 ............................A TCATCGTAGGCCGGTGCAGATTCTGGCCGACC 680927 29 100.0 33 ............................. GGCGGATACACCGCGCCGGTCGGATTGTTCGGG 680865 29 100.0 32 ............................. TTCGCCAGCGTCATCAATGTCATTCAGATCAA 680804 29 100.0 32 ............................. CCGATTTTGAGCATGGGGCCTCCTACTTGATG 680743 29 100.0 32 ............................. AGTGGGGCAGCGATTGGAAGCCCTTCACCTTG 680682 29 100.0 32 ............................. ATCTGGTGGCAAGAAAGGGTGTGGTCGTTGAA 680621 29 100.0 32 ............................. GCTAGCGGCGACAGCGCCACGGCGGCGGCAGC 680560 29 100.0 32 ............................. AAATCGGCGCGCGGATTGAATACCTGCGCGAA 680499 29 100.0 32 ............................. ATCATCGGTTCGTCCATCATGGACCGAATGAA 680438 29 100.0 32 ............................. TACCGGCGCGCGGGATGATGCCGCGTGAAATT 680377 29 100.0 32 ............................. GTGTTCAGGTCGCGCACCTTCTTAGAAAACGA 680316 29 100.0 32 ............................. CCGGCGGCCTCGGCTGACAGGGTGAACAGGTC 680255 29 100.0 33 ............................. CACTACGACGCCATCGCCGCCGGCGCGAAGAAC 680193 29 89.7 32 C........................G..A AAGCCAGTGCCTCAAGGCTTGAGGGTTCGAGA 680132 29 69.0 0 A.A.........GTT..........TTGA | ========== ====== ====== ====== ============================= ================================= ================== 18 29 97.5 32 GTGTTCCCCACGCACGTGGGGATGAACCG # Left flank : TTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCCAGGCTCAGCGGCTTGCCCGGGCCGATCAGGTGCTGCTGGCCGATCACCTGGTCGAGCGCTTGCGGGCGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTCGGCGGGATGGGGCGGAGAAACAGTATACCAGTTGGGGACACGTATGAAAAAACGCCGGTCAGGCGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGGCCTAGCCTAAGCCTTGCTGTTGAGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTCGGACTCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCGGGGTTTGTCGTGCTGATTTGAACGCCGCTTCATGACTGGGAAAATCGGTAGAATTTAAGATCAGATTTTTGTCTTTAAAAATCAGAAGCTTGAAAATGGT # Right flank : CGGGGGACGGCTGGAGTGGCGTCGCGGCGCTGCCAGTCCGGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTTCTGCACAACGAGTAAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAGGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGATCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTTACCTGGCACACGTCTTCCATGCCGTCGACGATGTAGTTGATGGTGTCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGGTCCAGCACCACCACGTCGAACTTGTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //