Array 1 625429-621569 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFHG01000001.1 Listeria monocytogenes strain 2842STDY5753933, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 625428 29 100.0 36 ............................. GTTGAATAACCGGAAGCAAGTGGTACGTTTGTCCAT 625363 29 100.0 35 ............................. TTATCCGAATGTAATTCTTTAATGTTCAAACGATC 625299 29 100.0 35 ............................. ATCGTTGGGAACCTTATTCACGGGATGATTTTAAC 625235 29 100.0 35 ............................. TTGAAATACGATCACGACATAATACTTTCGTCATT 625171 29 100.0 37 ............................. TAAAATATTGGCGAAAACAGGTGACAGCAATAACCGC 625105 29 100.0 36 ............................. TAGTTATAAAACCAGTAGACTTCTACGGTAGCATTC 625040 29 100.0 36 ............................. TCCGCCAAGCAAACTATACAAGACTCATTTATCGAC 624975 29 100.0 37 ............................. AAACTAACTTAGTTTCAGAAACATCCCGCGAAAACTC 624909 29 100.0 35 ............................. AAAGCAGTCAAGAAGGCAGTAACGGGTAATGGTAA 624845 29 100.0 36 ............................. CATGTTACCCCACGTAAACCCTTGCAACCATGCCAT 624780 29 100.0 34 ............................. TTCCCCAAACATTTTATCATTATGACCTTATAGG 624717 29 100.0 34 ............................. ATGAAAAAAGGTTCGCTAGATATTTCTATGCTAT 624654 29 100.0 36 ............................. GTCTACAACATCACGTAATAGAAATTGAGTCTTAAC 624589 29 100.0 38 ............................. CCAGTTAAAGAAGAACCACAACCAGAGCAAGAAAAAGA 624522 29 100.0 35 ............................. CCGAAAAAGTCGGCAAAGTAAGATTGTTTTTTAAA 624458 29 100.0 37 ............................. TTGGAAGGTTGCTTTGGTGGTATTTGAAGAGTTTGAC 624392 29 100.0 34 ............................. TTCAAATTATATGTTACTTTTTACAAGAAATTCC 624329 29 100.0 38 ............................. GTGAACTCTGTCCCGCCGAAGGGAGCCGTCCAATCGTC 624262 29 100.0 35 ............................. CTAAAAAGGATTGGCAGAATGGAAATGTGTACGTA 624198 29 100.0 36 ............................. ACCATTACCACCAAAGTCCCTACACTCAATACTACC 624133 29 100.0 36 ............................. GAGAACGCCATACCAGTTGAACTAGATCATGTAGTA 624068 29 100.0 37 ............................. TTGAGACCATCTTGCGAAAAATGGATGCGGCAGGGTA 624002 29 100.0 35 ............................. TACTCCGTTAATGTTTTAGATGCTTTTTTAACAGC 623938 29 100.0 36 ............................. ATTTTTTTATTCCAGCTTTTGCGTATCCGGCTTTTT 623873 29 100.0 35 ............................. TTGTTTAGCTCCGTCAATTGAAAGTCTCGCAATAG 623809 29 100.0 37 ............................. TTCTCGTAACTCTTGACGATTGCATTTTTTTACTCTC 623743 29 100.0 37 ............................. TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG 623677 29 100.0 35 ............................. AACAGTATCATCACGTTGTTATTGCTGTCACCTGT 623613 29 100.0 36 ............................. TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT 623548 29 100.0 36 ............................. TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG 623483 29 100.0 37 ............................. TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG 623417 29 100.0 36 ............................. ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT 623352 29 100.0 35 ............................. TTTATCACTCCTATACTTTTCTTATTTCTGTAAAT 623288 29 100.0 35 ............................. GCTTTTTTCAACAATTTTATCACCAGATGTCATTA 623224 29 100.0 36 ............................. ATAGATTAGTAGGGAAATAATATGTAATGGTTACTG 623159 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 623093 29 100.0 36 ............................. CTTCTTAACCCTTTAACACAAGCGCAAGATGGCTGT 623028 29 100.0 36 ............................. TTAATAAATCCGATGGTGATGCCTATGTTATACGTC 622963 29 100.0 35 ............................. TAAAACATCGCTTCGTTATACAATGTCTTTTTATA 622899 29 100.0 36 ............................. GTCAATAACTAGACGAGCTAACGTTTGTCGCTGTTT 622834 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 622769 29 100.0 37 ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 622703 29 100.0 36 ............................. TTGCAAACCTAACTTATCTTTGTTTTTTTGCTTTTC 622638 29 100.0 37 ............................. TTGGATTTTATTAAATACAGAGTCACGGATTGTATTT 622572 29 100.0 37 ............................. ATGAATGTATTAGCTACATGGACAACTATGCAACAGT 622506 29 100.0 35 ............................. TACGATAATACGAGTTTTTCAATAGGCAGACCTCC 622442 29 100.0 36 ............................. CCGGACAAATCCACTTTCATGGCTAGAGCCGCTTTC 622377 29 100.0 36 ............................. GGTGAATTCGTCACAAGTATTAAGTCAATTACAGCG 622312 29 100.0 37 ............................. GTTATTAAAGGCTATATAGACAAGGTCTTAAGCGAAC 622246 29 100.0 36 ............................. AGAAATATGGGAAGCTGGACCAGAAAACTTGGCAAG 622181 29 100.0 35 ............................. TTTATTGTCGATAAGCTCATGACAGATGAATCACT 622117 29 100.0 36 ............................. AAAGGTAAAAATATTCTTGCTGTGGCAGGTCCTGAT 622052 29 100.0 38 ............................. CTCTTCCACTTTTGCTGCTTTTTCCGCATCTGGTACAA 621985 29 100.0 33 ............................. TAAGGTCATATAAGAAAAAATGTATTTTTTCCC 621923 29 96.6 34 .......................C..... CAAGATATGCTAGAAATGGCGCAAATAGCGCGCG 621860 29 100.0 36 ............................. ACGTTTGCGGTAGTTTTACCGGGCACGGTCAAATAT 621795 29 100.0 37 ............................. AAGCTACCCCTGCAAGACATGAAATAATCGCAATGCC 621729 29 100.0 36 ............................. GGCTTTCTGGAATTGTTTCGCTGACATCCCTGCCAG 621664 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 621598 29 93.1 0 .......................C....C | A [621573] ========== ====== ====== ====== ============================= ====================================== ================== 60 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //