Array 1 610-469 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJV01000035.1 Erwinia amylovora strain NHWL02-2 NODE_68_length_609_cov_0.912863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 609 19 65.5 32 ----------................... AAAGAAACTACCCCCAACCCCCTAACGGGTGT 558 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 497 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 88.5 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : GACGCCGCCATTCGGATCCGGGGAGGATTCGGAACAGGAAGATTAGAGCCGGGCCTGCCTGTGTATGCCCGGAACGGTTTGCGCGTACAAGATTTAACTGCTGTTGATCGCAACACGCAGCGGCTGTTCAGCGATTCGGTTGAAATCCCGCCCCCCCGTCCTTCCCGAGTAATGATTATTCGGCGGGTGATGCCTAAAGCGCCCAAGAATGCCTCATACCTGGCGGCCAGCCTTCAGCGGCGGCAGGAGCAGGGCACACTAACCGGTGACCAGCGGCGGGCAATGTACCGTGCAGACAGTACCTATTTTGACACACGCAGGCAGATCCTGAGCGATGGACGCCTGACGACCAAAGACAAAACCCAGATGCTGGCCATTCTCACGTTTGAACGGCTTAAGGCACATCAACATATAACCCGGCCAGAATGGCTTAACTCGCAGGAGAACAACACGATGGGCAGTGAAAATA # Questionable array : NO Score: 4.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.30,-14.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 19328-18999 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJV01000042.1 Erwinia amylovora strain NHWL02-2 NODE_5_length_221250_cov_59.7572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19327 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19267 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19207 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19147 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 19087 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 19026 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30346-28791 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJV01000042.1 Erwinia amylovora strain NHWL02-2 NODE_5_length_221250_cov_59.7572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30345 29 100.0 32 ............................. CGGGCGAGTTTTTCAGGATGCGTCTCATTGAA 30284 29 100.0 32 ............................. CAATTTGTATACAGTCGAGAACGTGCCTTATG 30223 29 100.0 32 ............................. AACCTTTTACCATTGTCATAACAATATCTTCA 30162 29 100.0 32 ............................. CCAGGGGAGTTTCTTATTTTCCGGAGAGAATG 30101 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 30040 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 29979 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 29918 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29857 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29796 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29735 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29674 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29612 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29551 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29490 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29429 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29368 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29307 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29246 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29185 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29124 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 29063 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 29002 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28941 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28880 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 28819 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATGATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 44874-39385 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQJV01000042.1 Erwinia amylovora strain NHWL02-2 NODE_5_length_221250_cov_59.7572, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 44873 29 100.0 32 ............................. GCGCTGGAGTCGTACAGAAAAGAGTGGGACGA 44812 29 100.0 32 ............................. GTGTAGGTCTGGATCATCAGGTCACTGCCCTC 44751 29 100.0 32 ............................. CTGGGTAAATACGGTCTGGTTGCTGCCCGCCA 44690 29 100.0 32 ............................. ACCGCGAACAGCTCAATCTTCGTTATCAGCAG 44629 29 100.0 32 ............................. CTGGAAGATGATATTCAGGCCATCACGCAGGG 44568 29 100.0 32 ............................. ATGGTGTCGCAAAGTGTCGGGCCGTGAAGGTA 44507 29 100.0 32 ............................. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 44446 29 100.0 32 ............................. CGGCGCTGTCTATCCCCTGCGCGATCCCCTTT 44385 29 100.0 32 ............................. ACCCAGCTAGGGAATGTAGGTCTAGTCATGAA 44324 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 44263 29 100.0 32 ............................. GACGCTATAAGCCAGGCAAAAAGCCAGTATGA 44202 29 100.0 32 ............................. CCAGGATAGTCCGTTTTGATACCGTTAATCAG 44141 29 100.0 32 ............................. CGAAAAACATTGCACAAACCGAGCAGGTGGGG 44080 29 100.0 32 ............................. GTATTTATTTTTGCTCTACTTGCCGGGATGTC 44019 29 100.0 32 ............................. CCGGTTAACGTGCTTAAGGGCATCACTGAGAT 43958 29 100.0 32 ............................. TTATCACATTGATTTTATGAAATTATTTAATG 43897 29 100.0 32 ............................. AGCGGGACAGGTATATCGCATTAACACTGGCA 43836 29 100.0 32 ............................. TCAGTTCATTGGGCAACAGAACGCATCAACAT 43775 29 96.6 32 ............................T GAGGTATGTACTGCATCGTGCCCTGAACAAAT 43714 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 43653 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 43592 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 43531 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 43470 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 43409 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 43348 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 43287 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 43226 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 43165 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 43104 29 100.0 32 ............................. CATAACGCTTCTTTTCTTTGGTTCTTCTGTCA 43043 29 100.0 32 ............................. TTCCCGCGTTTCGTGGGATACCCCTTTTATGC 42982 29 100.0 32 ............................. CGAACCTATGCGGCATTAGCGGATGCCGCCGG 42921 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 42860 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 42799 29 96.6 32 ............................C ATTACTGGTAGTAACTCAGCAGTATTCGGTAC 42738 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 42677 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 42616 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 42555 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 42494 29 100.0 32 ............................. TGCTGAATACCGGTAAGCCTGGCTCTATCACC 42433 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 42372 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 42311 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 42250 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 42189 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 42128 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 42067 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 42006 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 41945 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 41884 29 100.0 32 ............................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 41823 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 41762 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 41701 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 41640 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 41579 29 100.0 32 ............................. GGAGAACGGCGGTCAGATTCCGGTAAACTGCA 41518 29 100.0 32 ............................. CCGGAGACAGTGTTGAAGCCGCAGTCACTCTA 41457 29 100.0 32 ............................. AGTGCTGAGTGTGTTAGTAGACAACCGGCCTT 41396 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 41335 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 41274 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 41213 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 41152 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 41091 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 41030 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 40969 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 40908 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 40847 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 40786 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 40725 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 40664 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 40603 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 40542 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 40481 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 40420 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 40359 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 40298 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 40237 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 40176 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 40115 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 40054 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 39993 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 39932 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTACGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 39840 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 39779 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 39718 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 39657 29 100.0 32 ............................. ACCAAAGGCGACCATCAGGTAGAACTGGCCTT 39596 29 93.1 32 .C...............A........... AGCTCAAATGCTACGCATCAGCACTGATTAAA 39535 29 96.6 32 .................A........... TGTCTCCAAGTTAGCAATTTAGTCTCTAAACC 39474 29 93.1 32 .............T...A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 39413 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= =============================================================== ================== 90 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //