Array 1 778200-774122 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTND01000002.1 Paenibacillus sp. RU4T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================================================================ ================== 778199 33 100.0 35 ................................. TTGTCGGGAGTAAAGACGAGGTTGCTTTCAAAATA 778131 33 100.0 35 ................................. GCGTTCTTGGGCCTCAAAAACTATTGAAATGGGTT 778063 33 100.0 37 ................................. CCGTCCGTGTGTCCCTTTGGGACAGGCTGACGGTCAG 777993 33 100.0 33 ................................. AACACTCTTCAACAGCCTTGACCCCTGACTGTA 777927 33 100.0 36 ................................. TGCTGTTGGAACAGAATGATTGCATTTTTGAGGTTT 777858 33 100.0 33 ................................. GGCTTGATCGTCCCGAAATTGCGCCGCCTCTTC 777792 33 100.0 34 ................................. AAAGGTTGTTAGCTGGGACAAGCTACCCGATGCG 777725 33 100.0 36 ................................. CGCAAGGCGCTGCCAGCTACCAATTGGATTTTGTAG 777656 33 100.0 34 ................................. CCCCTCTTAGATCGGCAATTCGTAATCTGTCGCC 777589 33 100.0 33 ................................. CACGGAAATGCTGGCGAATGCGATTAAGCATGA 777523 33 100.0 33 ................................. CGGATCATCCGGGGCTGTCTGCTCCCTCCCTCC 777457 33 100.0 33 ................................. GCTCGAAACCAACAATGACACCATCCCGCCAGG 777391 33 100.0 37 ................................. TTTTTAATCAATGCGTTCGCTGGGTTGATGGAGAACA 777321 33 100.0 33 ................................. GCCCGTATATCCCGATTGAAAAGGCGGATAACG 777255 33 100.0 34 ................................. AACATTGACCTGCCTATGACCTACGTCGATGGGG 777188 33 100.0 33 ................................. CAGTATCCCCCGAACTCCCCGAACGGGATCGAC 777122 33 100.0 35 ................................. CGTGGGAATTTGTTGTCTCCGAAATAGAGGAAATC 777054 33 100.0 35 ................................. ACCCAACAAAAACCCACCAATACGCTATTATCATT 776986 33 100.0 33 ................................. GGCAGTTGGTGGCTTATCCGGCTGTGGAAAAGG 776920 33 100.0 33 ................................. CTCGTTGGTGAAGTCTGCCTCCACATAATGCAC 776854 33 100.0 35 ................................. TTTCTAAGACCTACAGCGAATTCCTGAACAAAGGC 776786 33 100.0 34 ................................. ATCCAGACAAATACTTGATTTTGAAAGAAGTGCT 776719 33 100.0 34 ................................. ACTACACCTTACGTAATACGATTTTGTATGCCTA 776652 33 100.0 36 ................................. CGCGTGTCTATGTACAATTCCGTCACGCGCCCGAGT 776583 33 100.0 34 ................................. GCCGTCCGGCTCGTGATGCTGATAATGGCATCCG 776516 33 100.0 36 ................................. GTTTTTACTCGCAGGCGATGTCATCCAGGGCAGGCC 776447 33 100.0 35 ................................. GCCACAGAAAACACACGAACCGCGTCCTGGTCCAA 776379 33 100.0 34 ................................. AAGCTCGGCGACCTGATCGTCACGACGCACATCC 776312 33 100.0 34 ................................. GGCATTATCGGCGGGGAGCTATTGCAGAAAGGAA 776245 33 100.0 33 ................................. CAGCAATGGTAAAGAACATCGCATCCATCCTCG 776179 33 100.0 34 ................................. ATCGTTACTTGGAGCAAAGGTGGCATCGGCTACC 776112 33 100.0 33 ................................. TCCACCAGTTCCCGAAGGGCAAACTCTGCTTTA 776046 33 100.0 34 ................................. ACATTTTCGGCGGTGACACCGTGACGGAGAAGTT 775979 33 100.0 35 ................................. CCATCAAGATACCGAATACCTGAACACCCTCTATC 775911 33 100.0 36 ................................. CTACAATCAGCCTTGGTTATTCCCTGGCTGATGTGG 775842 33 100.0 36 ................................. AGGCAATGTAATTCGAATAGTTTTATCCGAAAACTC 775773 33 97.0 35 A................................ CGGAACACGGTTTACCATCCGACGTGTCAAAGCTA 775705 33 100.0 35 ................................. AATCCTATCAACGATGAATTGGACCAAATTGAAGC 775637 33 100.0 36 ................................. AAAGAGGTGTGTTGAAATGGGTAACGGTATTCCTAC 775568 33 100.0 34 ................................. AATACAGGTGCCTGCTGATAATGATCGGATGGCT 775501 33 100.0 34 ................................. TGCTGTCTTTGTGGTGATACGCTTGTTTTCTGCA 775434 33 100.0 36 ................................. TTCGAAATGGAAATCTATTCTGATGCAAAGGTCACC 775365 33 100.0 35 ................................. GTCCTCATGGGCATTGAGAGCATCCGTCACCTTGA 775297 33 100.0 33 ................................. CCGGTCCCCTCTCGATCTACCAAAATTGTGCAG 775231 33 100.0 35 ................................. CATTCGTACAGGACGGTTTCACTGGCGCCGACCAT 775163 33 100.0 36 ................................. TGATAAAGTCCGATGAGGGCAGTTGCCAGATTGACC 775094 33 100.0 35 ................................. GCTGCTGGCGTCAATCCAATTCGCTGCGGATTACC 775026 33 100.0 33 ................................. CCTGTAATCGTCTTTGATGGTATGGGCCTGCAT 774960 33 100.0 36 ................................. CTTGCTCCGCTCAGGATCAGAAAGGCTTGCGGGCTG 774891 33 100.0 34 ................................. CGAATCGCCGGCTTCGTAAGCGACAAGCGAGAGG 774824 33 100.0 35 ................................. AGCCAAATCAACCCCTCCCTTTACCCCGAAATTGC 774756 33 100.0 36 ................................. GATTTGTCGAGTGCTGTATCCTTGCTCTCGGTGCAT 774687 33 100.0 35 ................................. TAATTACAAATATTACTATGCTCCTTACAAGGATC 774619 33 97.0 35 ....T............................ CGGCTCGAAATGATCTGGACGAGCTCAAGACTACG 774551 33 100.0 35 ................................. CTACTGCTGCGGAGCGCGGAATTGCCTATGAGAAA 774483 33 93.9 33 ...............C...........A..... GTTTCGTTGACCACGCGGGCGGGCAGCGTTAGA 774417 33 90.9 34 ...........C...................TG CGTACCCGAAGTCGAGCCCGCGTTTAATCCGGTC 774350 33 87.9 34 ...........C......T....A........C AACATCTATGTCACCGAGGGCGGTGTGCTAATGA 774283 32 81.8 96 ..T....T.........A..-...A.......C TGATGGCTATTGTCAGAACGGTCCTAAAGCCGGATCACTCTCCGTTTAGGCATATTGCGTTTAAACTGCCCCCACACAAATGACACCATTAAAAAA 774155 33 81.8 0 A.........T...C..........T..A...C | A [774139] ========== ====== ====== ====== ================================= ================================================================================================ ================== 60 33 98.8 36 GTCGCTCCCCGTATGGGGAGCGTGGATTGAAAT # Left flank : CCGCATATTGTTGAACCGCTAGAAGGTGGTCATGGACTGACTCGCGCTGACCGTCCATTTGCCGGATATGAGCTACAAATTCTGGATGATTGGTAAGTTCTGAATTATTCGGCATCCTCTTCCCTCCTAGAAATACAGGACCAAAGCACCTAATTAAAAGTTATTACGAGAACTAAGGTTCGACAATCGCACACACAATCCTTCTTAAATTATGGAAAATATTCCAATAGGGATTTGGATGTGATTTAATCCTGGTTAAGATTGAACATTCCGTTTGGCAATAATAATTTTGTTCCATTATGATAGGGGTGCAATCCTTGTGCGAATGGCAAGCTCCCATAAAAAGCCGGGGAGATTCGCACCTCGAAACTTGTCGAATGAAGTTCAATTTCATAAAAAAGTATTCTCGTCAATCTTTGATACATACCTATTTTGATTGCAAAATTCGCAAAATCAGCCATTCTCATACCTTTCCAGAAAGGTTCGAGGCTGTTTCCGCT # Right flank : TTGAGTGGGTTCGTTAACTAGCTCAATCATCCCTTTACGGAAGTGTTTCACCAAAAAATGTTGCATCCCCGTCACTCCCCGCCCTCGCCCCCATACCTGCTCCGCAGCCGCCGCACCGCATCCATCAGCTCCCGCCCCGCGAGCTTCTCCGCCTGTCCGTACAGCGGCTCCCACAGAGCCATCCACTCCCGCCGCTCCGGCTCCTGCAGGTCGACGATGTTCATCAGGCGGCCGCTCCGCATTTCCGCCAGCTCCTTGCGGCTCATTTCCCGCGCGCTCTCGTTGGCCCAGCCGGTCGTCTCGCGCATCGCCTCCTGGATGATGGCCTGAACGTCGGCCGGCAGGCTTTCCCAGAAGGAGCGGTTCATCAGCACGGCATACCCGAGATAGGCGTGATTGCTGACCGTCATGTATTTTTGCACCTGGTAGAACTTCTTGCTGTAAATATTCGTGATCGTATTCTCCCCGCCGTCGACCCCTCCGCTCTCGTAAGCCTTGTA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTATGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 786876-789601 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTND01000002.1 Paenibacillus sp. RU4T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 786876 33 100.0 33 ................................. TTACGCCGGCTTGTGGACAAGCCGGCCAGCCGG 786942 33 100.0 34 ................................. GTCATCGCTCAGCACCTCATTGATCGCGCCTTCC 787009 33 100.0 34 ................................. TGATTGTGAAATTGCTCGGGGTCATACGGAACAG 787076 33 100.0 36 ................................. AAAGGTTGTTAGCTGGGACAAGCTACCCGATGCGAA 787145 33 100.0 33 ................................. GGAAGCAATTGCTGTCTTCCAGCGGATCAAGCA 787211 33 100.0 34 ................................. TCGAAAAGGTGTTCCCGTTTGAAATCAACTTCGC 787278 33 100.0 35 ................................. AAAGGTTGTTAGCTGGGACAAGCTACCCGATGCGA 787346 33 100.0 34 ................................. TTACGCCGGCTTGTGGACAAGCCGGCCAGCCGGG 787413 33 100.0 35 ................................. CTGCCTGGAGAAAAGATAGACTGCTTGCAACTCCT 787481 33 100.0 36 ................................. AAAGTCACCGTCGAGTACAACATGGTCGCTTCCCAC 787550 33 100.0 34 ................................. GAAGTCCAGGTTGTTGATCAGGTTGAAAATGTCT 787617 33 100.0 34 ................................. AAGGTGCCGGGTCTTGATCTCTGCCACCTCAGAT 787684 33 100.0 33 ................................. CCATAAGGAGGAACAGAGATGAAATTGACAATG 787750 33 100.0 33 ................................. ATGAGGTAGAGGTTTCGCTCATACGCAGATAGT 787816 33 100.0 35 ................................. TAGAGGCGGAGAGAGCCGAGCATAACACCACTCGG 787884 33 100.0 34 ................................. GCCGATGCATTACGCATAGCCGATGAAGCACTCG 787951 33 97.0 34 ..........A...................... CGGATCCGCAAGAGCAAGAGCCGGAGCCGATCGG 788018 33 100.0 34 ................................. ACCTTTGGCCCAGTCCAAAAGCTTGGTAGATGGA 788085 33 100.0 34 ................................. CGCAATTAAGCTCTGGAAGGATACGGATGTTTCG 788152 33 100.0 35 ................................. CTTGCTGTAGGCGCTCGATCTCTCCCTGCTGGCGC 788220 33 100.0 34 ................................. AGGAACACAAGACTTACCGAGGCGCGGCCAGATT 788287 33 97.0 34 ..............................G.. TGGAGACGTTGAACCATCGCGGGGAAATCGTCGC 788354 33 100.0 34 ................................. ATCAGAAAGTACCGAAGCGCAAGAAGGGAAAGAA 788421 33 100.0 37 ................................. AAGACCTATTGGGACTTAGATAAACTCATTGACAAGC 788491 33 100.0 36 ................................. TGGCGGCGGTACTGATCCTGGCGGCGGCACCGATCC 788560 33 100.0 35 ................................. AGAAACACGACCGTACCGATGCCCTGACTCGTCCA 788628 33 100.0 34 ................................. CAAAATGGTAATGTTTGTAACGCGCGGAAATCTG 788695 33 100.0 34 ................................. ATCGTCGCTCAGCACTTGTTGAACGGTATAGTCG 788762 33 100.0 33 ................................. CCGCGAGTTTACGGTATGGTGCGGCGGGTGCCG 788828 33 100.0 35 ................................. AGAAACACGACCGTACCGATGCCCTGACTCGTCCA 788896 33 100.0 36 ................................. TCCGGTACGTCGCGCTCCAGAATATCGCGTAGGCGC 788965 33 100.0 34 ................................. ATCCGGAATATCGAAAAGCACATGGAATGGGGCA 789032 33 100.0 33 ................................. GACCATTTGACGCATAAACGGCAAAAGTATGCC 789098 33 100.0 34 ................................. CTACCGAAGGACGAACTCGCAGCCTACAACGACA 789165 33 100.0 36 ................................. GCAGAGGATACCGGCTACAAGGTCCAGAAGCGAAAC 789234 33 100.0 34 ................................. AAAAGGAAAAAGGGTATACGCCGATTGCCCATGT 789301 33 100.0 33 ................................. CTTGATTCTGGGCAGCAGAAAGCCAGAGGCGAA 789367 33 100.0 34 ................................. TTTTGAGAGGGGTAGCCCATGAGTAACGAACAGC 789434 33 100.0 35 ................................. TTGCCATAGACGGCATCTGACAGGAGCCAGATGAC 789502 33 100.0 35 ................................. ATCATTTGGGTGATCGTCAATAATATCGGTCTTGT 789570 32 84.8 0 ..............-......AC...A.....C | ========== ====== ====== ====== ================================= ===================================== ================== 41 33 99.5 34 GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAT # Left flank : GGAGGAGGACAACGGAGTGCTTGTATTGATCACCTACGACGTAAGTACCATTACCAGTGATGGACGCAGGCGTCTTTCGCAGGTAGCGAAAAAATGCCAGGATTACGGACAGCGGGTGCAGAACTCGGTGTTTGAGTGTATCGTTGATTCGACCCAATTTCGCCGCCTTCGGTTTGAACTGGAGGAGCTGATTGACCCCGAAACAGACAGCTTGAGATTTTACAATATAGGCGATAAATACAAAACAAAGGTTGAGCATATCGGGGCAAAACCTGCTTACGATATGGATAGTCCGCTAATTCTATAGGAGCAGTACTTTGGTGCGAATGGGAAGCTCCCATAAAAACCTTGGGGGATTCGCACCTCGAAAACTGTCGAAAACGATCTATTTTCGGATAAGTGAAATGTAGTCAAGTATCGGAGCATACCGTATTTATTTGTTTTAAGGCGAAATGAACTTTTTCCATACCTTTATTAGATGGTTTTAGGTGATTTTTGCT # Right flank : CTGAGACGGGTGAAAAAATCCCCCGGCTGTGCTAAACTACAGGAATTGCATGTAATTTGGGGGGTAACAAAGCTTTATGCTTATCATAGGAATCGCCGGCGGCACCGGCTCGGGCAAGACGACCGTCGCCCGCTCCGTCATCGACCGGATGGGACCGGGCAAAGTGACATTCGTCTCGCAGGACAACTATTATAAGGATCACTCGGAACTCAGCATGAGCGATCGGGAGAAGATCAACTACGATCATCCCTTCGCGTTCGACAACGAGCTGCTCATCGAGAATCTCAAAACGCTGAAGCAGGGGCTGAGCGCCCAGGCTCCCGTCTACGACTTCACGGTCCACGCGCGCCGCACGGACAAGTCCGTCGAGCTGAAGCCGAGCAATATCGTCATCATCGAGGGGCTGCATGTCCTCTCGGACGAGCATCTGCGCGAGCTGCTGGACATCAAGGTGTTCGTCGACACCGACCCGGATGTCCGCATCCTGCGCCGCGTGCTGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGTGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //