Array 1 1616228-1614400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085791.1 Pasteurella canis strain HL_D1250 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1616227 28 100.0 32 ............................ TCATTGATCATTGTGTCGTATGCTGTATTGTC 1616167 28 100.0 32 ............................ AGTAAAACGGGTCTCTTAAATTCAGATTGTAA 1616107 28 100.0 32 ............................ ACTAGAAATAATCGATCGCATAAATGAAGATT 1616047 28 100.0 32 ............................ ATTCGGTTACTTCTCGACGTTCGCCAGTTTGT 1615987 28 100.0 32 ............................ CTGGGCGATTGTACGAGTCGACAGAAAATCGT 1615927 28 100.0 32 ............................ TTTTTGACTTTTTAACAGTCTTATAGCTTCTT 1615867 28 100.0 32 ............................ ATTAAATTCCACTTTGTTTGCATGTTCAAGCA 1615807 28 100.0 32 ............................ AGACTATTTTCGGTAATGCAGAACAAGAAATA 1615747 28 100.0 32 ............................ TCTGTGAAACCAAGAGCGGACTTCCTCAACCG 1615687 28 100.0 32 ............................ GACAAAGGTAAAACGTGGAATGAATACACAGA 1615627 28 100.0 32 ............................ GGAAGAGATTGTACTTGGGATTCAGCCATTTC 1615567 28 100.0 32 ............................ TAATGGATCTGAATTCATTGTGATATGCCAAA 1615507 28 100.0 32 ............................ GTATCTTTGCACAAAGCAAGAAAGCTACAAGC 1615447 28 100.0 32 ............................ TTTTCTGTGGCTGTGCTTTGAAAAGAAACCCC 1615387 28 100.0 32 ............................ ATTTTTGTATCTCGCATAAACTGAATTTGATT 1615327 28 100.0 32 ............................ TCGCATGTAAAGCCAGATTTTTATATTGAAGA 1615267 28 100.0 32 ............................ TTGTTCTATTGCTGTTTGTTTAGCTGCTTCAG 1615207 28 100.0 32 ............................ GTTCGAGTTTGTAAAAGGCTTGAACGGTGTCA 1615147 28 100.0 32 ............................ TTGATAAGGAAATGAGAAGTTTACTGAATTTT 1615087 28 100.0 32 ............................ GTTTTGGATGGATAAAGGGGAACTTCAGAAAA 1615027 28 100.0 32 ............................ AACATTGTTCGCACAAACGGTTTATCGGAACG 1614967 28 100.0 32 ............................ CGTTATCTTGTAATTTCAATTGATAAAGAATT 1614907 28 100.0 32 ............................ AAAAACCTTGAGCTTAATATTCAATACTTGCG 1614847 28 100.0 32 ............................ TGTAGAAGCTAGAGACTCGCTCCGTTCACTTT 1614787 28 100.0 32 ............................ AAAACCGATTTAGTCTATAAATACCAGAAAAA 1614727 28 100.0 32 ............................ AATTGCACTTTGTGCGCCAAGCTTATTTGCTG 1614667 28 100.0 32 ............................ GCGCATTATGAATGCAAACGATGAATTACGCA 1614607 28 100.0 32 ............................ ATGATTCTGTGAGTAAGACCAAATGCTGCCAG 1614547 28 100.0 32 ............................ ATCCACAGCAAATCCATCAACTTTAACTGGGT 1614487 28 100.0 32 ............................ TTAAACTCTCTTTAAATCAGCATTAAAGAGAG 1614427 28 82.1 0 ....................T.C.T.TC | ========== ====== ====== ====== ============================ ================================ ================== 31 28 99.4 32 GTTCAACATCGTATAGATGGCTTAGAAA # Left flank : CAGCTTTATCAACAATTATCACAGGTAGGATTGCAGGATTATGCGTTGATCAGTAGTGTAAATAAAACTCCTCCTGTAGCAGAATATCGTTGTTATAGCCGTGTGCATCGCAAAGGACAAAGTACGATTCGCCGTACAGAAAAGTTTCTGAAAAGTATTGATAAATGGCATGAAGGGATTCGTGAAGAAATGCAACAACGCCAACAAAATACACCTTATTTTCCACATGTACATTTAAAAAGTGCGAGTACAAATCAGCGTTTTATCTTGGCAATAAGAGTCAATAAAACCTCTCAGCCTCATATTGCTCAATTCAGTAGTTATGGATTAAGTAATAAAGCAACTGTGCCACACTTTTAACCTAATTTATAACCCTTTTTTCTAATTGGCTAAATTAACCAATGAGATCAAAGGGTTATAAATATGCTGTAAAAAAGGGTTTTTCTTTCAGATGCTCTTTAACAATTTGAAGAATAAATAAATTTTTATTAATATTCTTA # Right flank : TGCTTAAATAAAGCTTATTATTTAAACATATTGAAAAAGTTAAATGTTATTTAATTTAGTTTAAACTGGATTTTAATATTTTTACACTTAGTTAAGGAGGATGTTGTGCGTAAGACACCTTATATTGCCTCTTCAGATTTAAAAACCATAATGCATTCTAAAAGAGCCAATATTTATTATTTAGAACACTGTCGAGTATTGTTAAATGGTGGACGAGTGGAATATGTGACTGATGAAGGTAAAGAGTCTTTATACTGGAATATCCCTATTGCTAATACTAGTTGCCTGCTATTGGGGAGTGGAACGTCTATTACACAAGCTGCAATGCGTGAACTATCAAAAGCAGGGGTAATGGTGGGGTTTTGTAGTGGCGGTGGTACGCCTTTATTCAATGGAACGGAAGCAGAAATTGGCTGTGAGTTTTTTAGTCCACAAAGTGAATATCGTCCTGTTATCTATTTACAACAATGGTGTCGTTTTTGGTTTGATGATGAAAAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACATCGTATAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCAACATCGTATAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1662991-1662304 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085791.1 Pasteurella canis strain HL_D1250 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1662990 28 96.4 32 ....................A....... ATGATCTTGCATCTAGATAATTGTTCTTGAGT 1662930 28 100.0 32 ............................ ACGCCTGTGCTTTTGTTGCTTGCCGTTGTCTC 1662870 28 100.0 32 ............................ TCTTTATCAATTTTTGAAAAATCACTCATACT 1662810 28 100.0 32 ............................ TTTAAATGCAATAACGGTTATTGAAGGGGAAA 1662750 28 100.0 32 ............................ TCTGAATCTTGCGTGTTGCGACAAAACATCTA 1662690 28 100.0 32 ............................ GTCTGCTGACTTTAAATACTGCAACAAGGCAT 1662630 28 100.0 32 ............................ TTGCTCTGATATACCAAGCGAGATGCTGCCAG 1662570 28 100.0 32 ............................ AAGTATTTTTCACGCACCAAAAACAGATTTAA 1662510 28 100.0 32 ............................ GCAGTTATATTCCCAAATTGACTTATCAAAAC 1662450 28 100.0 32 ............................ ATGATATTCGAACACTGGCGCATCAGTTTTAG 1662390 28 100.0 32 ............................ TGATCAATATACACTTGCAACAAATCAGGATT 1662330 27 82.1 0 ...........T.....T..-...A.G. | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.2 32 GCTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TACCTTACAGTGCAGACACTTATTTACATCGTATTGGGCGCACTGCTCGAGCGGGAAAAAAAGGTGTTGCTGTTTCGTTTATTGAAGCTCATGATTACAAATTGTTGGGCAAAGTTAAACGCTACACTGATGAACTATTAAAAGCACGTACTATTGAAGGTCTAGAGCCTCGTACTAAAGCGCCTAAAGATGGTGAAGTGAAAACAGTCAGCAAAAAGCAAAAAGCGCGAATCAAAGCAAAACGAGAAGAAAAGCAAAAACAAACACAGCAGAAAAAAGTAAAAATACGGCATAAAGATAGCAAAAATATTGGTAAGCGCCGTAAACCCAGCGGACAAGTGAGCCAAACTGATTAATTTATTATACAGGTAACCCTTTTTTCTTAATGAGTTTTTTATCTAATAAGATCAAAGGGTTATTTTTATAGCTAAAAAAAGGGTTTTCGTATATAAAATATGCAAAAGCTTGATAAATATTGAGGTCTGAATTAAACTGCCAAA # Right flank : CGGAAAATAAAGCATTGGATACTAATTGTTGTGCAAGCCAGTTTAGTCTGTTTTGCCTATTTTATCGTTGTACATTTTGTTTTTAACTTGATAAGAAGGACAAAAAGACAGCCGCACTTTTGTCGGTATGTAAAAGTGCGGTTGATTTTTCTTCTGTTTTATAACGCGTTATTGGGTTGCTGGGGTACCGTATTTTTGTGCTAACTCGTTATTTAGTTGTGTAAACTCATCAGTGATTTTAAGTAGTACATCTCTTTTCACCAATAATGCTTGCCCACCAGCTTCGGAAGGATTTTGCTGTAGTTTTACATTATCTGTCATTAGTTCTGATGAAGTAACAAGTAAGATTTTTGCTTTTTCTTTTAGAGCACGAACTTCTGCACTATAAATAGCTAATGCATCCAATTCTTTTACAATACTATTAATTTCTTTTGAAAATGTAACTAATAGAGTTTCTAAGGCTTTTTTGTCACCTGATTGCAAAATTTCAACTAGTTGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //