Array 1 3518-4747 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSII01000053.1 Vibrio cholerae strain N2813 NODE_120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3518 28 100.0 32 ............................ ATACGCTTGCATTGATTCTGCTAATTCCACTG 3578 28 100.0 32 ............................ TCTACGTCAAAGCTCATTAAGACCTCCCAAGC 3638 28 100.0 32 ............................ TTTTGTTAACATTTCTCTCTTTTATTACATTA 3698 28 100.0 32 ............................ ATAATTAAACCTCTTCCTCATCATCCGCATTA 3758 28 100.0 32 ............................ AATGTGATTGATGCCGCGCAGAACGCAAGTGA 3818 28 100.0 32 ............................ TTTCGAAAATATTCTTGATGCTTCCGACATAG 3878 28 100.0 32 ............................ TGAACCCAAATATGGAAGTCCCATTTATTCAT 3938 28 100.0 32 ............................ ACAAATCGGACACGCTTGCATCCAAGATTAAA 3998 28 100.0 32 ............................ AGATGGAACCGCAGACCAGCGCGGTTGGCCTG 4058 28 100.0 32 ............................ TTGCTTGTTTCGCTTACTCTTCTAATGCATCT 4118 28 100.0 32 ............................ TAACGGTGACGTTAATACCGTAATTGGCTCAC 4178 28 100.0 32 ............................ TTTTTGCAGTGCAAAAAGCAGGTGTATTTTGT 4238 28 100.0 32 ............................ GCTAATCCTTCGGTCGTCTCTTCCTCGAAAGA 4298 28 100.0 33 ............................ GCCAAGGGGGCTGATGTAAGGTCAGGTATCCCA 4359 28 100.0 32 ............................ AGACTACACGGTTTCCGTGTTAGTCAAAGGCT 4419 28 100.0 33 ............................ ACCAGAAGCAACCAAAGTGAGTTTTGCTTTTTT 4480 28 100.0 32 ............................ GCTAATCGAGGCACTAGAGGGGCAGAAGATGA 4540 28 100.0 32 ............................ ATAACGACAGATAATGCGAAGTAAGAAACAGC 4600 28 100.0 32 ............................ CTACGGCTTCGCCTACCCGCTAGACACTCACT 4660 28 100.0 32 ............................ TGCTGTTGGCCAAGACTACATTCAACTTGAAA 4720 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTCGAGTCTTCTCAAAAACTTCTTTCTGAGTTGTACCTGTTACGCTAGCTCGTGTGGCATCTTGGCGTTTACCCTTCCAGGTACCGTCGGAATCTTGGTATACGTTATAGTCTTTGTCTGACATAAATTACCTCATAATGAATAAGTGTAAATTGGATCACCTTGTGCAGTATTGCACTTTTACTATGTGGGTATTTGTACAGTTATATTCAAGGTGCATATGTGAAAATGCCTAACAAACGCTTCAAGAGGGACTTCCAACGCGTGGCATTTTTAGTGTGCGTTGATTTTGGTGGTTTCAGTGTTATGCGGAAACTTGGTAGTAGCGTTGTCAGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAACTTGTTGATTTATATTAATAATAAATCGAGTAAAAAATAAAAGGTTATTCTTAGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATAGTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTACGACTGTTGTGTTTAGGTTTGGTTGTTATGCGTTGCCAGCCCCTTAGGCGGGCGTTAGCTTCTTAAAGGCTGAAATCATCAAAATCGAAGCTAAATTGTTCTGAAAAATCAGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11637-15629 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSII01000063.1 Vibrio cholerae strain N2813 NODE_166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11637 28 96.4 32 ...........C................ TACTTGTCCGGCTGAGGGAACTAAAGACAAGT 11697 28 96.4 32 ...........C................ TTACAGCTGATTGACTTAACTCTCTCACGCTG 11757 28 96.4 32 ...........C................ ACAATAAAGTGCAGCCACTGTGGTAATCAGAT 11817 28 96.4 33 ...........C................ GAGAATAAAGAGCTTTGTAAACAGAACCTTCAT 11878 28 96.4 32 ...........C................ AAAACAGTGCAGGGTCAGAAATGGCTACGCGA 11938 28 96.4 32 ...........C................ TGATGACTCTGCTAGAAAAATCGCTTGCTCAT 11998 28 96.4 32 ...........C................ TTGTAAACCTAGCCCGTTATACTTTTTTGCAA 12058 28 96.4 33 ...........C................ CCAAATGAGTCAACTAAGTTGACATGTCAACTT 12119 28 96.4 32 ...........C................ GTATTCCGCGCTCTCGTCTAACTGCTTTAGCT 12179 28 96.4 32 ...........C................ AAACGGCACGCTTTGAAGAAAAGGCCGCACTG 12239 28 96.4 32 ...........C................ TTACAATCTCCCCATCAAATCAGGAGTCAACA 12299 28 96.4 32 ...........C................ GATCGCGCTGGGTTAAGCTGGAATTTCTGAGT 12359 28 96.4 32 ...........C................ ACCTAGCTCTGATAGTGTTTCGTCAATAATAT 12419 28 96.4 32 ...........C................ ACAACTGAAAACGACGTGCATCACCTGCTTTG 12479 28 96.4 32 ...........C................ ATGCTCACGGCCTGAATAAGTGGCTGAAGCTA 12539 28 96.4 32 ...........C................ TGCAAGCCTTGTGGGTTTGATGACTCCAAAGT 12599 28 96.4 32 ...........C................ ACTTGAAAAGGGTGATGCTCCTTATGCTGAGG 12659 28 96.4 32 ...........C................ AATTAAACCCATTGCTTGAAGCAGGTTTTTCT 12719 28 96.4 32 ...........C................ TCTTGCGAAAGGAACGCTTCAAGCATTTCCTC 12779 28 96.4 32 ...........C................ TGTAGCGCACTGGCAGAGTATAACAAACGCAT 12839 28 96.4 32 ...........C................ TCTCGGAGTTCTGTCAATAACTGTACGGAGCC 12899 28 96.4 33 ...........C................ CTTTGTTCAGGTGTTGGCAATTGAGGTCTTGGC 12960 28 96.4 33 ...........C................ CGCAAACACGCCGACCGCGAAGAAGATGTAGAC 13021 28 96.4 32 ...........C................ ACTACCCAAAAGGAAATGAAAATGAAAATGAA 13081 28 96.4 32 ...........C................ AGAAACGCACTGACTCATCGTTGTTTTTGATG 13141 28 96.4 32 ...........C................ TTTGGCTGGCTCCATTTTAGTACGATAGTTTA 13201 28 96.4 32 ...........C................ ACATCGCCTTTCACAGCGAAGTATTTCGTTAG 13261 28 96.4 32 ...........C................ ACATCCAACGTAATACGCACCATCCCGCCTTT 13321 28 96.4 32 ...........C................ TATGGGCTTTGACCAATCCAATCAGAAAATTG 13381 28 96.4 33 ...........C................ ATAGAACAGCGGCCTTTTCTGTAGTGACCAATT 13442 28 96.4 32 ...........C................ CCTTTTCTCCAATAGAAGCTAAAGAAATTGCT 13502 28 100.0 32 ............................ AAGAAGGGGAAACCGCCAGCCTAATGCTAAAC 13562 28 100.0 32 ............................ CAAAAACAAGCGCGAGCTTTTGCACTGCATTA 13622 28 100.0 32 ............................ TCTTTTTAGCACAGCGTTAGCTATTAAAGTAA 13682 28 100.0 32 ............................ TTTCGGCTTGTCGGATTTGCACCGTCTAATTT 13742 28 100.0 32 ............................ AAGCAAGGACACCTTATGAAAGTTCATTTATG 13802 28 100.0 32 ............................ AGTACATAAGGCATTGGGGGAAAACGGGTTTA 13862 28 100.0 32 ............................ AAGCTGAAATAGAACCCACCCTAAAAGAGTGT 13922 28 100.0 32 ............................ TCATCATCACTAGAAAGCAACTGTTCTCTATA 13982 28 100.0 32 ............................ TCATTCGTTATGTATTTACTGCCGATTAGTTA 14042 28 100.0 32 ............................ TTTTTCTGAATCTGATGCTAGTTCAAATCGAG 14102 28 100.0 32 ............................ AGCGATCCACTGCATGGCGGCTCAGTACCACT 14162 28 100.0 32 ............................ TCAACTGGGGTGTGCAAGAGCACTACCCGAAA 14222 28 100.0 32 ............................ TTCAATTTATCTTTCATTGTGACCTCAGAACA 14282 28 100.0 32 ............................ CAAAAGGAAATGAAAATGAAGTATTCAGAAAT 14342 28 100.0 32 ............................ TGTGCATACCGCCGCGGAGAGTCAACGCTTTG 14402 28 100.0 32 ............................ AAAAGCGCGCTCATTTGGGCGTCCGAGGGGGT 14462 28 100.0 32 ............................ TAACGACGTCATTCAAACTATGAAAATGCTCG 14522 28 100.0 32 ............................ GTGTTATGGGTGCAGGCTGTAGGGCGCGGTAT 14582 28 100.0 32 ............................ ATTAGAATGATACCTCTGCAAGTTTCGCTTTC 14642 28 100.0 32 ............................ ATTCTTTGCTGGTGGCCTCTAATGGACTTGAA 14702 28 100.0 32 ............................ ATCAAGATATTTAGTATCAATTTTAGAGAGGT 14762 28 100.0 32 ............................ TTAAATAACCATCACGCAGCACGGCGCAATAT 14822 28 100.0 32 ............................ AATCTCACTGGTCATCATGGCTTTTTCTTTGT 14882 28 100.0 32 ............................ GCGTTAAAGCGTTTCTTCTGCCAGTAGTTATT 14942 28 100.0 32 ............................ AGACTGCGCCCACTCTTCCTGTACGTCGTATA 15002 28 100.0 32 ............................ ATGAAGACCTTTTTCATAGGCTCTTGTTGAGT 15062 28 100.0 32 ............................ AACGGCTAAGCTCAGAGCCGATAATATCAGGA 15122 28 100.0 32 ............................ TTGGGGCGAAACGGCAACATAAAACCGAAGCC 15182 28 100.0 32 ............................ AAGCTCCATTTTTTCCGCTATTTCGCAGGGTC 15242 28 100.0 32 ............................ TCGCACGGCTCGTCATGGCTGATTCACACGGA 15302 28 100.0 32 ............................ AAGCGACTGTGCGGACAGGTCCAATAACACAA 15362 28 100.0 32 ............................ TTTTAAATCACGGCTAAAGATACGTAAAAGGC 15422 28 96.4 32 .C.......................... GCATCCAAGTAAAACGCCGACAAATCTTTAAA 15482 28 100.0 32 ............................ ACGAAACGCAAGAAACAATCCGCGCAGGCGAC 15542 28 100.0 32 ............................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 15602 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 67 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATAGTTGCAACGGGTGATTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTGTTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //