Array 1 115074-110276 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061743.1 Rathayibacter toxicus strain FH232 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 115073 29 96.6 34 ............................C GACGCTACGCTCATCCTCACCAGAAAGTTGATAG 115010 29 96.6 32 ............................C GCCAACTCTGGTAGTGGCGCTATGGGTGTCTT 114949 29 100.0 32 ............................. CGCGTTAATAGCGGCATTCGCGGAGTTAGCGA 114888 28 93.1 33 .................-..........A ACGTCTCGGCGATAAGGTCACGGAGAGTAATAA 114827 29 96.6 32 ............................C GCCGACTGGACCTCTATCCCCGATTCTTTTAT 114766 28 93.1 32 ........-...................C GCCCGCCGGAGTACAGACAGCACGCGTACGTC 114706 29 96.6 32 ............................C AGATTTGACCGCATTCATGAAGTCCGCCGCTT 114645 28 93.1 33 ........-...................C CTCATAATCGACCCCTCCGCGCCACCCCTGCGG 114584 29 96.6 32 ............................G ATGAGACAACCACCGCCATCGAGGATTTTTAC 114523 29 96.6 32 ............................G GATGGAAACTCGTCAACCGTTCCCACATAAGC 114462 29 96.6 32 ............................C TATCTAGCTCGGACATTCTCAAAAGCGACGAA 114401 29 96.6 32 ............................G CACTCTCGCCCTCGACGGGTGTGGGGGTTACT 114340 29 100.0 32 ............................. CGGTTTTTTAGGATCAGAAGGCTCCCACGTTT 114279 29 96.6 32 ............................C CGCTCCCAGGAGCTGGCTTTCCCAAAATTATA 114218 29 96.6 32 ............................C TCCGTAAGCATCAGAGATATTCTCGGCTATGC 114157 29 96.6 33 ............................A CCGCCATGCCGGGCGCCTGGAACGATTTCTGTC 114095 29 96.6 33 ............................A CAAAATAGTCGGAATAAAACTCCGAAAGAGAGG 114033 29 100.0 32 ............................. CTGGGACTATCTCAGCCGATTGCCCTCGCGGA 113972 29 100.0 32 ............................. GCCCTGCCCCCCACCCCAGCCAGGGAGCGAGA 113911 29 96.6 32 ............................A GATCAGCAGCAGCAGTGCGACCTAGCACGGTG 113850 29 96.6 32 ............................C CGCAAGCGCTTCCATCATCAGATCGACGACCT 113789 29 96.6 32 ............................C ATCTTCCACCATCACCCTAACCGCCACACCCG 113728 29 96.6 32 ............................C GGTTTCCAGTCCGATACCTCTTATCGGGAGAA 113667 29 96.6 33 ............................C GCGTCCGACAATATCGGGGTCAAAGTAGTCTAA 113605 29 96.6 33 ............................G TCCGGCACCACACATGCCTCCAAAAGGTAGCGA 113543 29 100.0 32 ............................. AAATTGATGAAAGAGGCTCTACCTGAGGGTAC 113482 29 100.0 32 ............................. CATGGCTACCTGGCTGGCTGGGGAGCGCGTCG 113421 29 100.0 32 ............................. CTGGTTGCCCGCCGGGGACCTGACCCTATCGA 113360 29 96.6 32 ............................C ATTTGTATGCCCATCTCGATGAGGCGCGGCAG 113299 29 100.0 32 ............................. CGCCACCGAGCTTAGACCCGACATTGCGGCCA 113238 29 96.6 32 ............................C GCCAGACAAAAAATTGTCAGTCATATTGACTC 113177 29 96.6 32 ............................C TCTTCGGCTTCTTTGAGAATACTTCCCATATC 113116 29 96.6 32 ............................C CTTGGCGGCAAGGCAGATAATCAAAAGGATCA 113055 29 96.6 32 ............................G CACAAGCGCCACACTAGGCCGCGTACTGGACC 112994 29 100.0 32 ............................. AAGGACCACAATAATGTCTAAATATAAAGTTT 112933 29 100.0 32 ............................. TGCTGAGGTTCACTAACGCGATCTCGATTTCT 112872 29 96.6 32 ............................G CCCGCTACAGCAAAAGCCCAGCACATCGCATC 112811 29 96.6 33 ............................G GGAGTTTTCGCCGACGAGCCTTAAGGAGCCTTC 112749 29 100.0 32 ............................. GTTTGACGATTCCTTCACCGCCAACAGCACGG 112688 29 96.6 32 ............................C GCGCCATTTCCAGGCTACCGGGGTAAGTCGTG 112627 29 100.0 32 ............................. CGACAGGGGTTTCACCCAGCGCGACCGCGGTT 112566 29 100.0 32 ............................. GGTTACGGGTGCCGTACCAACATGTGCTGTCG 112505 29 96.6 32 ............................G AATCGTTCACATACTGCTGCCAAGGGTCCAAA 112444 29 96.6 32 ............................G ACGCTCACGAAGAAAACCCTCAGGATTACTCT 112383 29 96.6 32 ............................C ATGCTCCCCCGCCTGATCGAGATGGGCATACA 112322 29 96.6 32 ............................C CAGCGTTTGGGTTAAAGTAACGGCGGTGATAA 112261 29 100.0 32 ............................. CGTATTCTTCTTCTTTGGTGGTCATATTGTTC 112200 29 96.6 32 ............................G AGCCTGAATTCTTAGTACTCTATCCTTCAAAA 112139 29 96.6 32 ............................C GCCGACGCGCAATGGGGCGAAGTGCATGATAT 112078 29 96.6 33 ............................C CGGCGGGACCTCTGGGGGGAATAATTAAAACTA 112016 29 96.6 32 ............................G TTTGCAGGCGCTGCCCAGTAATCGATCAGTGC 111955 29 96.6 32 ............................G CTAACATAGGTGTTTTCTTGGCGGAGTTGTGC 111894 29 100.0 32 ............................. AAACTGGTTATCGGGAAGGGAAGAAGATACTT 111833 29 100.0 32 ............................. AAGAGAAGGATTACTATCGGCAATCGCCTTAG 111772 29 100.0 32 ............................. TCACGCGGAGAATAATCTGGCTAACCGTCTCG 111711 29 96.6 32 ............................G TGGTGACCGCGGTCAGCTGCTTACTTGGGTGC 111650 29 100.0 32 ............................. CCATGAACCTTCACGGACCTCACCAGCAACAG 111589 29 96.6 33 ............................A CGGCAGCGACTATGGCGGCGATATTCACCTACA 111527 29 96.6 32 ............................C ATCAGAGACCGCCGGGTTATCGAAAGATTCAC 111466 29 96.6 32 ............................G AAATAAATCTCCACGTATCGGACTGATTTGAA 111405 29 100.0 33 ............................. GCTATTAACGCACAATCCAAGAAAACCCACTGC 111343 29 96.6 32 ............................C GATCATGTCGGGATTATATTTATCAAGTTCTG 111282 29 100.0 32 ............................. CTTTTCACAAGCGCGACATTTCTTCTGCATAC 111221 29 100.0 32 ............................. CTTTCGTGGTCGTTGCCGACGCCTCCGCTGAG 111160 29 96.6 32 ............................C AGTTTCGACCGCAGCGAAGTTGAGGAACTGGT 111099 29 100.0 32 ............................. GTCGCGCCGCCGACCTTTAAAAGTGCACCAAC 111038 29 100.0 32 ............................. GTCCACTAGTGTTTGGGGACGGCTTCAAAACA 110977 29 96.6 32 ............................G GTCCTCATGAATCGCGCGAGCGGTATTTATGC 110916 29 100.0 32 ............................. ATCTAGTCATCACACATCCAGACGGTGACAAG 110855 29 100.0 32 ............................. GAATAGGGTTGCTTTTTCGCCCACAGTGTCGT 110794 29 96.6 32 ............................G GGCCGTCGTCGCATGGCGAATCGTCCGGTGGT 110733 29 96.6 32 ............................A CCGTCGTTAAAGCGCCCTCAAACTGCGGGTCC 110672 29 96.6 32 ............................C AACCTCGTCGCGACAACCCGAGCCGTCAATCA 110611 29 100.0 34 ............................. CACCTCACCATCCGGATCCAACACACCCACATCA 110548 29 96.6 32 ............................A TCAAGGCCATGGCAGAATCTGTCATGTCTCAC 110487 29 93.1 32 .C..........................C CTCGAAGGCTACGGGCCGTACAACGTTGGAGC 110426 29 96.6 32 .............G............... CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 110365 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 110304 29 75.9 0 ..CG.....A...G.........CAC... | ========== ====== ====== ====== ============================= ================================== ================== 79 29 97.2 32 GTATTCCCCGCGCAAGCGGGGATGGTCCT # Left flank : CCCCCGCCTGATGGCCTTTGACCTTGACGACACCCTCGCCGCGTCGAAGTCTCCTGTTGACCCGGCGATGGCCGATCTCTTGGTGCGGCTGCTCAGGGCAACAGAGGTGTGCATCATCTCAGGCGGCCAAATCGGCCAATTCCGGATGCAGGTTCTCGACCGTCTCGACGGCGCGACCCCGAAGGTTCTCGCCGCGCTACACCTGATGCCCACCTGCGGCACCCAGTACTACCGCTACCGCAACGGCGACTGGGCCCAGGTTTACGCCGAAAATTCCACTGATGACGAGAAGTCACGAGCCCTTGTCGCGGTCGAAGAGAAAGCACAAGAATTCGGCTATTGGGAGTCCGAGACGTGGGGGCCGATCCTCGAAGACCGCGACTCGCAAATCACTTTTTCTGCCCTCGGGCAGGCCGCGCCGGTGGAGGCTAAGCAGGCGTGGGATCCGACTGGCGGGGGATGGTCCATCAGAGTAATAGGCGCCCTCCCGATCGGATTAG # Right flank : CAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTCA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125991-117520 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061743.1 Rathayibacter toxicus strain FH232 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 125990 29 96.6 32 ............................T GTATTCGGGTGAGACGCCGGTTTATATAAAGA 125929 29 96.6 32 ............................G ATAAATGTCTTTATATACAGGCTCTAGGAAGC 125868 29 96.6 33 ............................T CGATGTATTTGATTGGTTCTGCCTTGATGTATA 125806 29 96.6 32 ............................T TTTAGCTGTCGTCGATAAATCGGTTTCTATAC 125745 29 96.6 32 ............................T AGATTACACTCGCACCGATGAAGCGCTCCCGC 125684 29 100.0 32 ............................. GGATTTAACCGCATTCATGAAGTCTGCTGCTT 125623 29 96.6 32 ............................A TGTCGTTGCTGTGCATATTGGCCGCGGGTGGT 125562 29 100.0 33 ............................. ATCCTCAACTCGCTCCTGCGGGCCGCTCTCAGC 125500 29 100.0 32 ............................. TCGCCGAGAGTGGGCATTACAAACCAGCGCCT 125439 29 100.0 32 ............................. TCCCCGCACTGATCGATTACTGGGCAGCGCCT 125378 29 100.0 32 ............................. GTGGGGGCGATTACGCTACCCCAAGCCCAAGA 125317 29 96.6 33 ............................G TCATCGGCGCCAGGACAAGCAAACGGGCGAGTG 125255 29 96.6 32 ............................T ACTGTCCTGCTGGCCGCATATCTGGCAAAAGG 125194 29 96.6 32 ............................G AAGTGATCTGCTGCTGCGAAAAATCCCTATTA 125133 29 96.6 32 ............................G CGACGATCGCATCACACCCACCCATCTGTGTC 125072 29 96.6 32 ............................T CACGACCGCGACGCGTAACGGGATCTATAACA 125011 29 96.6 32 ............................T CGTCCTTTTCTTCATCAAAAAGCGCCTCGATG 124950 29 96.6 33 ............................A AATATCCTCACACAACGAGAGAACCCCCAGGCG 124888 29 96.6 32 ............................T AAGGTCTCCGGAGCGATAATTGCTCAGATGGT 124827 29 96.6 32 ............................T TCGTTTGCCGCGGTCGCCTCTCCATCTCATGA 124766 29 100.0 32 ............................. TACGGGAACGGATGCGTCTCCGGATGGGTTCT 124705 29 100.0 32 ............................. TTCGGCCCAGGAACGCCATCAACCCAAATCAC 124644 29 100.0 33 ............................. CATCGCATCCTCAACCTTCCGAGCCTTATCCAC 124582 29 96.6 32 ............................A TTGATGCGCCGATTAGTCTGGCTTCTCCGCCG 124521 29 100.0 32 ............................. CGGAACGCCAAACCGGCGACCCACACGAGGAC 124460 29 100.0 32 ............................. AACTGATAGACCTATCGCTCCACTACACCGAT 124399 29 96.6 33 ............................T ACGCCGCCCTTCGCGGAGCACGTGATAGCGTCG 124337 29 96.6 32 ............................T CAATGACGACGACGCAGCAGCAAAACTCATCA 124276 29 100.0 32 ............................. CCGTCAGCAACTAAAGCATCCCTCGTCTCTCG 124215 29 96.6 33 ............................A CCGTCGACGACGAGTACGAGAAAATCCTTCAGG 124153 29 100.0 32 ............................. CTGACCCGTGATTCCGCTGGTCCTGCCGGTAT 124092 29 96.6 32 ............................G CTCGCATTATTCACGGTGAATACATCGTGAAT 124031 29 100.0 32 ............................. TGCACGCTCGCTCCTGTATATAAAGGCCAGGA 123970 29 96.6 32 ............................G CTCACCGAGCGGCTCGGGATAATGCCTCGCCG 123909 29 100.0 32 ............................. CGTAGATGCCCTGCTGTTAGATCCCCGGAACG 123848 29 100.0 32 ............................. TCAAACCCTAGTTATCGGCATAGTAAACATGC 123787 29 96.6 32 ............................T ATCATTACCGCGGTTATTACTTTAGTGATAAC 123726 29 96.6 33 ............................G ATACGGAGTGTCGACCACTTCGCCAGGAAATTT 123664 29 100.0 33 ............................. ACGAAAATGCCTACCTGTACGGATCTATATGGG 123602 29 96.6 32 ............................T CACGTTTCAGATTGCTATCGCCAACGCCGGTG 123541 29 96.6 32 ............................T AGCAGTCAAGACGTCGAGCGATATATCGAACT 123480 29 96.6 32 ............................G TAGTCTAAACCGCATAAAAGAATAAACCCCCT 123419 29 96.6 32 ............................T TCCACCGTCGAGCGGGGGGTAGTTTACGGCCC 123358 29 96.6 33 ............................T ACGCGACGCCGAAACGGGAATAGGGACACCCGG 123296 29 100.0 32 ............................. GGACCTACCGGACTTTCGGGGAACCTAGATGC 123235 29 100.0 32 ............................. CGCTTTCCAGCGCCTGTATATAAAGATATTTA 123174 29 100.0 33 ............................. GTCCGGCGGGAGTGGCGAGTTCGCTGCCGGATA 123112 29 96.6 32 ............................G CCTCACCCCACTCGCTGACAGCAGCCTCATCA 123051 29 96.6 32 ............................T ATAATTTGCGCGTGATAGCATGGCAGCAGACA 122990 29 100.0 32 ............................. GTCTTATTGCCGTCTTCGATACTGAGACGACT 122929 29 100.0 32 ............................. ATGGCCATCCAAACACGTCGCCCTACAGGTAT 122868 29 96.6 32 ............................G CAATATCATCAGCAGTCAGCAAAAGGCCCGAG 122807 29 96.6 32 ............................T GGTCAACCCATTTTCGGCGGGCCCATCAATGA 122746 29 96.6 34 ............................A CATCTACAAACCCGAGCAGAACCTGGGCACCCTG 122683 29 100.0 32 ............................. TTTTACCCGCTCACATATCAGACCGATCCGGC 122622 29 96.6 32 ............................T CACCTGCCCATTGGTGGCCCTCCAGCCCTCAT 122561 29 100.0 32 ............................. ACATGTCCTACTCATTGGGGGGTTCCGACTAT 122500 29 96.6 32 ............................G CAGAAGTAAATGCACCCCCCGCCTACTAGCCC 122439 29 96.6 34 ............................T GTTTCCTCACTGTATAGGGCGGAGTTGTGAGTGA 122376 29 100.0 32 ............................. CCTCGACGACGAGTACGAGAAAATCCTTCAGG 122315 29 96.6 33 ............................A TCAGAGTAATAGGCGCCCTCCCGATCGGATTAG 122253 29 100.0 34 ............................. GACGCTACGCTCATCCTCACCAGAAAGTTGATAG 122190 29 100.0 32 ............................. GCCAACTCTGGTAGTGGCGCTATGGGTGTCTT 122129 29 96.6 32 ............................T CGCGTTAATAGCGGCATTCGCGGAGTTAGCGA 122068 29 96.6 33 ............................A ACGTCTCGGCGATAAGGTCACGGAGAGTAATAA 122006 29 100.0 32 ............................. GCCGACTGGACCTCTATCCCCGATTCTTTTAT 121945 29 100.0 32 ............................. GCCCGCCGGAGTACAGACAGCACGCGTACGTC 121884 29 100.0 32 ............................. AGATTTGACCGCATTCATGAAGTCCGCCGCTT 121823 29 100.0 33 ............................. CTCATAATCGACCCCTCCGCGCCACCCCTGCGG 121761 29 96.6 32 ............................G ATGAGACAACCACCGCCATCGAGGATTTTTAC 121700 29 96.6 32 ............................G GATGGAAACTCGTCAACCGTTCCCACATAAGC 121639 29 100.0 32 ............................. TATCTAGCTCGGACATTCTCAAAAGCGACGAA 121578 29 96.6 32 ............................G CACTCTCGCCCTCGACGGGTGTGGGGGTTACT 121517 29 96.6 32 ............................T CGGTTTTTTAGGATCAGAAGGCTCCCACGTTT 121456 29 100.0 32 ............................. CGCTCCCAGGAGCTGGCTTTCCCAAAATTATA 121395 29 100.0 32 ............................. TCCGTAAGCATCAGAGATATTCTCGGCTATGC 121334 29 96.6 33 ............................A CCGCCATGCCGGGCGCCTGGAACGATTTCTGTC 121272 29 96.6 33 ............................A CAAAATAGTCGGAATAAAACTCCGAAAGAGAGG 121210 29 96.6 32 ............................T CTGGGACTATCTCAGCCGATTGCCCTCGCGGA 121149 29 96.6 32 ............................T GCCCTGCCCCCCACCCCAGCCAGGGAGCGAGA 121088 29 96.6 32 ............................A GATCAGCAGCAGCAGTGCGACCTAGCACGGTG 121027 29 100.0 32 ............................. CGCAAGCGCTTCCATCATCAGATCGACGACCT 120966 29 100.0 32 ............................. ATCTTCCACCATCACCCTAACCGCCACACCCG 120905 29 100.0 32 ............................. GGTTTCCAGTCCGATACCTCTTATCGGGAGAA 120844 29 100.0 33 ............................. GCGTCCGACAATATCGGGGTCAAAGTAGTCTAA 120782 29 96.6 33 ............................G TCCGGCACCACACATGCCTCCAAAAGGTAGCGA 120720 29 96.6 32 ............................T AAATTGATGAAAGAGGCTCTACCTGAGGGTAC 120659 29 96.6 32 ............................T CATGGCTACCTGGCTGGCTGGGGAGCGCGTCG 120598 29 96.6 32 ............................T CTGGTTGCCCGCCGGGGACCTGACCCTATCGA 120537 29 100.0 32 ............................. ATTTGTATGCCCATCTCGATGAGGCGCGGCAG 120476 29 96.6 32 ............................T CGCCACCGAGCTTAGACCCGACATTGCGGCCA 120415 29 100.0 32 ............................. GCCAGACAAAAAATTGTCAGTCATATTGACTC 120354 29 100.0 32 ............................. TCTTCGGCTTCTTTGAGAATACTTCCCATATC 120293 29 100.0 32 ............................. CTTGGCGGCAAGGCAGATAATCAAAAGGATCA 120232 29 96.6 32 ............................G CACAAGCGCCACACTAGGCCGCGTACTGGACC 120171 29 96.6 32 ............................T AAGGACCACAATAATGTCTAAATATAAAGTTT 120110 29 96.6 32 ............................T TGCTGAGGTTCACTAACGCGATCTCGATTTCT 120049 29 96.6 32 ............................G CCCGCTACAGCAAAAGCCCAGCACATCGCATC 119988 29 96.6 33 ............................G GGAGTTTTCGCCGACGAGCCTTAAGGAGCCTTC 119926 29 96.6 32 ............................T GTTTGACGATTCCTTCACCGCCAACAGCACGG 119865 29 100.0 32 ............................. GCGCCATTTCCAGGCTACCGGGGTAAGTCGTG 119804 29 96.6 32 ............................T CGACAGGGGTTTCACCCAGCGCGACCGCGGTT 119743 29 96.6 32 ............................T GGTTACGGGTGCCGTACCAACATGTGCTGTCG 119682 28 93.1 32 .................-..........G AATCGTTCACATACTGCTGCCAAGGGTCCAAA 119622 29 96.6 32 ............................G ACGCTCACGAAGAAAACCCTCAGGATTACTCT 119561 29 100.0 32 ............................. ATGCTCCCCCGCCTGATCGAGATGGGCATACA 119500 29 100.0 32 ............................. CAGCGTTTGGGTTAAAGTAACGGCGGTGATAA 119439 29 96.6 32 ............................T CGTATTCTTCTTCTTTGGTGGTCATATTGTTC 119378 29 96.6 32 ............................G AGCCTGAATTCTTAGTACTCTATCCTTCAAAA 119317 29 100.0 32 ............................. GCCGACGCGCAATGGGGCGAAGTGCATGATAT 119256 29 100.0 32 ............................. CGGCGGGACCTCTGGGGGAATAATTAAAACTA 119195 29 96.6 32 ............................G TTTGCAGGCGCTGCCCAGTAATCGATCAGTGC 119134 29 96.6 32 ............................G CTAACATAGGTGTTTTCTTGGCGGAGTTGTGC 119073 29 96.6 32 ............................T AAACTGGTTATCGGGAAGGGAAGAAGATACTT 119012 29 96.6 32 ............................T AAGAGAAGGATTACTATCGGCAATCGCCTTAG 118951 29 96.6 32 ............................T TCACGCGGAGAATAATCTGGCTAACCGTCTCG 118890 29 96.6 32 ............................G TGGTGACCGCGGTCAGCTGCTTACTTGGGTGC 118829 29 96.6 32 ............................T CCATGAACCTTCACGGACCTCACCAGCAACAG 118768 29 96.6 33 ............................A CGGCAGCGACTATGGCGGCGATATTCACCTACA 118706 29 100.0 32 ............................. ATCAGAGACCGCCGGGTTATCGAAAGATTCAC 118645 29 96.6 32 ............................G AAATAAATCTCCACGTATCGGACTGATTTGAA 118584 29 96.6 33 ............................T GCTATTAACGCACAATCCAAGAAAACCCACTGC 118522 29 100.0 32 ............................. GATCATGTCGGGATTATATTTATCAAGTTCTG 118461 29 96.6 32 ............................T CTTTTCACAAGCGCGACATTTCTTCTGCATAC 118400 29 96.6 32 ............................T CTTTCGTGGTCGTTGCCGACGCCTCCGCTGAG 118339 29 100.0 32 ............................. AGTTTCGACCGCAGCGAAGTTGAGGAACTGGT 118278 29 96.6 32 ............................T GTCGCGCCGCCGACCTTTAAAAGTGCACCAAC 118217 29 96.6 32 ............................T GTCCACTAGTGTTTGGGGACGGCTTCAAAACA 118156 29 96.6 32 ............................G GTCCTCATGAATCGCGCGAGCGGTATTTATGC 118095 29 96.6 32 ............................T ATCTAGTCATCACACATCCAGACGGTGACAAG 118034 29 96.6 32 ............................T GAATAGGGTTGCTTTTTCGCCCACAGTGTCGT 117973 29 96.6 32 ............................G GGCCGTCGTCGCATGGCGAATCGTCCGGTGGT 117912 29 96.6 32 ............................A CCGTCGTTAAAGCGCCCTCAAACTGCGGGTCC 117851 29 100.0 32 ............................. AACCTCGTCGCGACAACCCGAGCCGTCAATCA 117790 27 89.7 34 .....-...........-..........T CACCTCACCATCCGGATCCAACACACCCACATCA 117729 27 89.7 32 .....-...........-..........A TCAAGGCCATGGCAGAATCTGTCATGTCTCAC 117670 29 96.6 32 .C........................... CTCGAAGGCTACGGGCCGTACAACGTTGGAGC 117609 29 93.1 32 .............G..............T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 117548 29 93.1 0 .............G..............G | ========== ====== ====== ====== ============================= ================================== ================== 139 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAAGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGCGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCTGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : CTCCGCAAGCAGGTCGCCGCCGACGACAAGGAGTCGTCCCACGCGAGCGGGGATCACCCTCAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //