Array 1 1633369-1632791 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006712.1 Bifidobacterium breve JCM 7017 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1633368 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 1633302 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 1633234 33 97.0 35 ..................G.............. TTCGAGTCGCAGGCCAACGGTGCGAAAATCTACTA GG [1633218] 1633164 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 1633097 33 97.0 36 ....A............................ GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC 1633028 33 97.0 35 ....A............................ TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA 1632960 33 97.0 35 ............T.................... CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG 1632892 33 100.0 36 ................................. CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 1632823 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 97.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GCCTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACCCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGTCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATCTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACATCCCGCCACC # Right flank : GCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGCTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGAATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGCC # Questionable array : NO Score: 8.92 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1641017-1637649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006712.1 Bifidobacterium breve JCM 7017 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================== ================== 1641016 33 100.0 35 ................................. AAAAACGGTTTCAAGCAGTCGGCGAACGATTTCAG 1640948 33 100.0 34 ................................. CTTTGCTCCACTGAATGAAGAGGGAGAATCCCAG 1640881 33 100.0 34 ................................. ACGCTTTAACCGATAGAGGAGAAAAAATATTATG 1640814 33 100.0 35 ................................. GGTTATGCGCCTGAATATGCTCAAATAACACGCCT 1640746 33 100.0 35 ................................. TTCGAGTGTCTTGAGCGGAGCCTGTTTCCCTTCCG 1640678 33 100.0 34 ................................. TACCTGTCGATGATGCTCGACGTTCCCGTGCCGC 1640611 33 100.0 34 ................................. CCTGAAGCTGCTTCATCAGCGAATCGTCAAGCAG 1640544 33 100.0 35 ................................. AAAAGCGTGGCGATGATGCTCACCCAGACGGCTGG 1640476 33 100.0 33 ................................. TCGCCACCACACCTGGGGCATGGCGAACACCGC 1640410 33 100.0 36 ................................. TTGTCCGCGCCGTAGGTGCCCTCGCGCACCAGGTAG 1640341 33 100.0 33 ................................. CGGCCGGCGCGGCGACGAGTTCGCCCTTCGCAT 1640275 33 100.0 34 ................................. CCGCACAGCCATTTCTCCGCGACAGCCTGCCCCG 1640208 33 100.0 35 ................................. ATTTTGAACTTTGGCAGGAAGATGATGAAGGCCGG 1640140 33 100.0 34 ................................. CAGTAGTTGAGGTTGGCGGCGTCGTGGAGCATGC 1640073 33 100.0 34 ................................. CAGCAGGGCAGCAAACGGCGGGTGTCAACGTAAT 1640006 33 100.0 35 ................................. ATCTGCATCAAATCACTCGGCGAAGTAACCTTCAT 1639938 33 100.0 35 ................................. CTGGTACCACGCCAAGAGCTGGGCCATGACACGGC 1639870 33 100.0 33 ................................. CGCTTTGATTTGCGGTGTTTCAAAACGTAACCG 1639804 33 100.0 35 ................................. ACGTGAAACGTTTGGAGGAACCACCGACTTGGAAA 1639736 33 100.0 33 ................................. TGGACGTGCGCAACATCACGCGCGACGATGGAC 1639670 33 100.0 62 ................................. TTGAATATGTGTACGGTGATTGCGATTTTGATTATGGTCGCTCCCCATCCGGTTTGATTATG 1639575 33 100.0 33 ................................. CATGCTTGGGTCATCATTGCGCCGGCCGGTCTG 1639509 33 100.0 34 ................................. TGGTTATCGAGCCACAGGGGTTCCGCGGAAGTGG 1639442 33 100.0 36 ................................. GTCCAGCACCACGGTGAACGTGTCGGGCAACACCAC 1639373 33 100.0 33 ................................. CACGACTTGCGTGACCGCGTCCACCTTGTTGTC 1639307 33 97.0 33 ............A.................... TGACTGGGAGGGTCAGTCCGGAGGCGACCCTTT 1639241 33 100.0 35 ................................. CTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCAC 1639173 33 100.0 35 ................................. TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA 1639105 33 100.0 36 ................................. TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA 1639036 33 100.0 34 ................................. GCGAAAACCCGGACTTTGGGAGAGCGGACGGCGA 1638969 33 100.0 35 ................................. GCCGCCTATGACGGCGGCATGCGGCCAGCGGCGAA 1638901 33 100.0 34 ................................. AAAGCCACCGAAGAAAAGGAGAAGTAAATCATGG 1638834 33 100.0 35 ................................. ATTCTGGCAAAGGGCTCTCTGACCCCGATCGCGTT 1638766 33 100.0 36 ................................. ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC 1638697 33 100.0 35 ................................. GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG 1638629 33 100.0 35 ................................. CGTGAAGAAATGCGATTGGCATCCAAGGGAATGCC 1638561 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1638495 33 100.0 35 ................................. TCCTTGACTAGATGGATTGGTTAACAATTGATTGG 1638427 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1638361 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 1638292 33 97.0 35 ..........C...................... TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGA 1638224 33 100.0 35 ................................. ATTCTGGCAAAGGGCTCTCTGACCCCGATCGCGTT 1638156 33 100.0 36 ................................. ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC 1638087 33 100.0 35 ................................. GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG 1638019 33 100.0 35 ................................. CGTGAAGAAATGCGATTGGCATCCAAGGGAATGCC 1637951 33 100.0 33 ................................. ATTTGTCCACGACCGATGATGTTTCCCGCCACC 1637885 33 100.0 35 ................................. TCCTTGACTAGATGGATTGGTTAACAATTGATTGG 1637817 33 100.0 33 ................................. ATGATCGTCCACACCCAGGTGCCGATGCGCCCG 1637751 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC G [1637731] 1637681 33 97.0 0 ..........C...................... | ========== ====== ====== ====== ================================= ============================================================== ================== 50 33 99.8 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTGGGGCTGGTGCCGTTTTGTTGGACTCGTCGTTGATTCCATCACCACCAATCATGCCACAAGACCGAGCTCGCGTCGACGATCCATGATGCTCATGCCGAACTCCGTCTTGATCCGCCTGTCCCGGTACCAGACCATGTAGTCGTTGAGCATGTTGATGAACCCGTCCATCGAGACGCCCGCGAAGCTGCGCTTGTGGAAGAACTCCTGCTTGAGACGGCCGAAGAACCCCTCCGCGGCCGCGTTGTCCGGAGAACAGCCTTTCGCGCTCATCGAACGCGTCAGGTTGTTGTCCGTGCAGATGCGGATCCATTCCGGCCACCGGTAGTGGCAGCCGCGGTCACTGTGGATGATCGGCTTCTCTCCGTCCTTGAGCGTGGAGCAGGCGTCGGTGAGCATGCCGTTGGACAGCTCTGCCGTTCGGGCTCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.40,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //