Array 1 40727-39478 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMNL01000009.1 Escherichia coli strain MOD1-EC6919 MOD1-EC6919_9_length_152186_cov_45.6776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40726 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 40665 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 40604 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 40543 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 40482 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 40421 29 100.0 32 ............................. GAGAAAAATGCTACAAAAATGAGCTACGAAAC 40360 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 40299 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 40238 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 40177 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 40116 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 40055 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 39994 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 39933 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 39872 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 39811 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 39750 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 39689 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 39628 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 39567 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 39506 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57172-56228 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMNL01000009.1 Escherichia coli strain MOD1-EC6919 MOD1-EC6919_9_length_152186_cov_45.6776, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57171 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 57110 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 57049 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 56988 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 56927 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56866 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56805 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56744 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56683 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56622 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56561 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56500 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56439 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56378 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 56317 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 56256 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //