Array 1 128178-127173 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKQ01000001.1 Porphyromonas macacae DSM 20710 = JCM 13914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 128177 36 100.0 30 .................................... CCCGAACTGATTTTTACTGCTGGGCGACTA 128111 36 100.0 27 .................................... TATAACTTGTTTTCTTATCATTCAAGG 128048 36 94.4 30 AG.................................. AGCAAGAATCAACTGATTGAGGTTTCACGT 127982 36 100.0 29 .................................... ATTGTTCGGAAACAGACAGGCAGCTTATT 127917 36 100.0 29 .................................... TGATGCAGAATGATCAGACAAGACCTCCC 127852 36 100.0 30 .................................... AAAGGGACGAATTGTATTTTAACATGAGCC 127786 36 100.0 29 .................................... AAACAAAGCGGTGCTGTTGTCTTGTTTTG 127721 36 100.0 29 .................................... CTGCGAATGACTGGGAAGAGCGTGTACGC 127656 36 100.0 29 .................................... GTTCGGTGTATGCCGGATGTGGATGGTGA 127591 36 100.0 28 .................................... AAAAACGGCTTGTTTAGCTAAATGAAAA 127527 36 94.4 28 TG.................................. AAATATTTTCTTGCGGTAAGTGATAGCA 127463 36 100.0 28 .................................... TATGATGGAAGCAGCTTTGATTATTAAG 127399 36 100.0 28 .................................... TATGATGGAAGCAGCTTTGATTATTAAG 127335 36 100.0 28 .................................... TGAAGAAGCTTGTATTAATTGATAAGGA 127271 36 97.2 27 .............C...................... AAAAACGGCTTGTTTAGCTAAATGAAA 127208 36 80.6 0 AG......................G.....A.T.GG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 29 GCCTATAAGGCTTTAGTAATTTCTACTATTGTAGAT # Left flank : TTTAGATTTGTTCAAGGATATTATCGGGTATTTATGAATGATCAACCGGGTGTCAAGTTACCCTCAATAAGTCGTTAATTATGCTTATTATAAGTTATGATATTAAAGACGATAAATTAAGAAATCGTTTTATGAAGGAGCTTGTAAAAAATGGAGCTATCCGGTTGCAGTATTCTGTATATGAGTTTAATAATAATTCGAGGTTGGTTACACATATACTTGCACTTATAGAGATGTCTTTTGCTCCCAAGTTTACAGCAGATGACAGTATCGTCATTTTTGAAACGGAAAGAAATAAACTCATAAAGTATGGTAATGCTATCCATCGAGATAAACCCGTTTGTTATTTCTGATATAAAGTTTTGTTAATCAGTTTTTTATAGTTTTTTGAAGCAAGGAGGGGGGGGATAAAATGAATTTCTAATTCGTAGAATAGACTTTTTAACTTGTTAAAATACAGAGAGTTTCTTATCTTTGTTTTGTCTTATTGCAGATTTGCT # Right flank : AAGATGCAGTAGAAAAGTATAATGATGGTTTTTATTCAAAAGCTATCATTATATTTGTTTAAATCTATCGGTTTGAGTATTGTATATAACCATGGGAAACGATAGAATATATCGCGAAATTTTTCTTTTGAGAAAATAGAAAGATTGTTAGTGTGATTTTCAATAATATTTTAAATCTAAAAAAGTATAGACATGGAACTGCCCTTTTCAGAATCCTACCGCATTAAAATGGTAGAGCCGATCCGAAAAAGTACACGTCAGGAACGTGAGCAATGGATCAAAGAAGCCAAGTATAATCTTTTTATGTTGAAGAGTGATCATGTGTTTATCGATTTGCTTACCGACTCCGGCACGGGAGCCATGAGCGACAAACAGTGGTCTGAGTTGATATTGGGAGATGAAAGCTATGCCGGTGCACGCTCTTATTATAAGATGAAAGCTGCCATCAAAGACATATTGGGGTTTGATTATTTTCTGCCTACCCATCAGGGACGTGCAGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTATAAGGCTTTAGTAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 53923-52872 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAKQ01000004.1 Porphyromonas macacae DSM 20710 = JCM 13914, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 53922 33 100.0 36 ................................. ACTTAAGGACACGGGCGTTACAGCTATGTTACGCGC 53853 33 100.0 35 ................................. AAAAATCTATCTAAAATCGAAATAGCCTCAGAAAC 53785 33 100.0 34 ................................. CTTCCAAACTCTTCCACGACTTTGTTTGTATCAG 53718 33 100.0 37 ................................. GATTACTTTGCCCCAGGGGCATACATGGGAGAGTTAT 53648 33 100.0 34 ................................. TTACCCATCCTCTGTGCCGGGCACTACGAAAACA 53581 33 100.0 36 ................................. CCTGATGGCGGGGGGTTGTTGCTGCCAGCGATGAAC 53512 33 100.0 35 ................................. AGGTCAATGATGCCGGCACGCAATTTCGCTGGCTG 53444 33 100.0 34 ................................. ATCTTACGTTTGTGCTCGATGACCGTGATGTGCT 53377 33 100.0 34 ................................. ACTTATTCCATCCGTACTTAGATACCCGGCTATG 53310 33 100.0 36 ................................. ATGTGAAATCTTTGTGCCAGAAGAGGCTTCTGGTGT 53241 33 100.0 33 ................................. GATGGTGTCGACTTCGGCGCTGGCCAGTATCGC 53175 33 100.0 35 ................................. AAAATCGCAAAACAAATCGATATCGTCTATATTAA 53107 33 100.0 36 ................................. GCCATTATTCCGTGTCTTTATATAAGTCGAGGATAC 53038 33 100.0 34 ................................. TTGAGTTACACCTCCGCAAACCAGTTTGTCCATT 52971 33 93.9 34 ............................C..T. ACTTCACTGCCTACGATGGAAACGCCATAACGTT 52904 33 93.9 0 ............................C..T. | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 99.2 35 GTCGCAACCCGTCCGGGTTGCGTGAATTGAAAT # Left flank : TTGATGAGTATCCGGTTTTCTTAATCCAATAAATCATGTATTTACTTATTACTTATGATGTCTGCACCTCAAGTCCTTCAGGAGCTAAACGCCTTCGTCAAGTTGCACGTATCTGTCAAAACTATGGACAACGAGTTCAAAATTCTGTTTTTGAGTGCTTAGTCGATCCCACTCAATTTATCTTAATGAGGCAAGCTCTTCTTAATACTATAGATGAAGAGCTTGATAGTTTACGGATTTATCAACTTGGCAAAAATTATCGTAATCAAATCCTTTTTTACGGTCGAGTTACTTCTTTCGAGTTAGAAGGAGAATTAATTATATAATCGCTCTGCGAACCTCAAGTACACAGTAAAAGCACACCCCTTTCGCATCTCTTCATTACCAGTAGATTAGATCGAATTTGTCAAAATTATAGAAGTGCGTTCTTTGAAATATTTAGATATTCGCATTTTACCTCTCTATATGTCCTATAAATAATATATATTTACATACTTACA # Right flank : TGCAATTAGATTTTGTAACGAATGTACTTATTTAAAGCAAATTCAAGAAAAGAAAAAGAGATAAGAAGCTATAATTCAACGGAGGAGAATTCGGCAAAAGCCTTTTGAAAGTCTCTTTCGGCTTCCAGAGTTCGGTTAACCGTGTCGTAATACAACCCTATCTCCAGGATATAATCCAAAAGGGAAATGTGCCCGGCATCAAGCGCTTTCTTTAGCAGTTGTGTGCTGTTTACATCCACAAGCGTTCTACGATAGCTCTCGGCTGTATCCTTCAACTCGGGCACGTTCATATAAAATTTTAAGCCGGCTGTAATATTGCTGTTTGGTGTCAATTGTCTTCAATTCAGCTGTCCGGACAACTGCTTTTGCCTGTTTGACACGGTTTTTATTCGCCCAAAGAGGAAGCGATATACCAAAGAAATACCATGGGAACGCTCTCCAGCCTCTTTTTCACTCATATAACCGGCCGAAAACGCAGGTAACCCATTTGCTTTACTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAACCCGTCCGGGTTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //