Array 1 14080-16328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPFN01000124.1 Nitrosococcus oceani strain AFC132 contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14080 28 100.0 32 ............................ TTTCGTCTTTTCAGTGCCGCCATGTTTTACAT 14140 28 100.0 32 ............................ GTGTCCGGTCATCACCTCTTTAGCAATACCAA 14200 28 100.0 32 ............................ CTGACTATATCGAGCATCAACTAGCCCACGCG 14260 28 100.0 32 ............................ GTGTTGAGTAAGTCGCTCCGCGGTGCGTCTTC 14320 28 100.0 32 ............................ CGTCCAGGTAGAAATACAGCGTGCCGGTATCC 14380 28 100.0 32 ............................ ACAAAATCATGCCGCAACGCTGTATCCCATAC 14440 28 100.0 32 ............................ AGAATCATTGAATAGAGTGATAGATGGTGGGT 14500 28 100.0 32 ............................ ACTAGTACCGCCATATAACGGAGTAAAAGTTT 14560 28 100.0 32 ............................ TATAGGGAAATGTAAGCTTAAATCAGTGTTGT 14620 28 100.0 32 ............................ TTTGAGGGCGAAAACTCCCAGGAGGCAATAGA 14680 28 100.0 32 ............................ TTTAGCGATTGGTTAAAGCGGCATATTAAAAA 14740 28 100.0 32 ............................ ATGTATGTTGCGCTTGCGTAATACCACTATAC 14800 28 100.0 32 ............................ ATTAGGCGTTACCTTCTCTTTGACTACGAAAT 14860 28 100.0 32 ............................ TGCAAGAGATCGGGGAATTCAAACCAGACCCT 14920 28 100.0 32 ............................ CAAGGGATATGGTTTTGCGCTTCCCCCCAAAT 14980 28 100.0 32 ............................ CGTGGTGGTGAGCACGCCCTTGTGGGCCTTGA 15040 28 100.0 32 ............................ TGGCTGAGAGCAGCGACAAAACAGGGAGTTTG 15100 28 100.0 32 ............................ ATCACCGAGACGTACAAAACCATTACCTCCGT 15160 28 100.0 32 ............................ TCGCGCGCGCGCGTGAGAGAGAGATCTAGATA 15220 28 100.0 32 ............................ AGGACCTTCCTCAAGAAATCTCTGCCGCTTAA 15280 28 100.0 32 ............................ AATGAGTGATCGCTACGGCTGTTTCAACCGGG 15340 28 100.0 32 ............................ GCACGGCCAAGGGACATGGCGGGTGAGTCCAC 15400 28 100.0 32 ............................ TCCGAAAACCTCAACTTCTTTCGGTGCGGAGA 15460 28 100.0 32 ............................ CAATCACTTGGCGGGCAAATACCAGGATCAAG 15520 28 100.0 32 ............................ CTCCCGTAAAAAACGTGGTGGTGAAAGAGGAC 15580 28 100.0 32 ............................ TTCACGGGGCCCGTGAGCATCTTTCGGAATAA 15640 28 100.0 32 ............................ GGCAGTATTCCTCGCGGGCCTGGGTGACGTCC 15700 28 100.0 33 ............................ CTCGCGGGCCTGGGTGACGTCCCACGGGTCTCC 15761 28 100.0 32 ............................ GGCTCCGGAGGCCCGCAACCCGCCTGCATGCT 15821 28 100.0 32 ............................ ACAGGGTGCCCGGCAACTCGTCCATTTCGGTA 15881 28 100.0 32 ............................ TTCGGCGGCAACGGCCGTTCTCAGATTTCAAT 15941 28 100.0 32 ............................ TTGCTGGAATCGCCAAGGAAGTGAATGCCCGC 16001 28 100.0 32 ............................ GTATTGGTGCGTTGCCGCGTAGCGAAACCCTA 16061 28 89.3 32 ......C...........G.T....... CTCAAATGCCAAATGATTTTCCTGCCGCCTTG 16121 28 89.3 32 ......C...........G.T....... TTCCTTGCCGGGGAAACCCAGCTCAGCTCTCC 16181 28 89.3 32 ......C...........G.T....... CACGATTCGGCAACGCAAGCGCGCCCTAGCTG 16241 28 89.3 32 ......C...........G.T....... AAGAACAACCGCAAGGAGGTACAGGTTCTGGT 16301 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCCTTAGAGAGATTGGTGTCACTTAACTGGATGAAAGGATTGCATGATTATGCAACCGAATCTCATATTCGGCCTATCCCACTAACGTGCCAACACCGCACCGTAAAGCGTATTCAATCCAAAAGCAGCCCAACCCGGCTGCTCAGGCGCTCTGTGAACAAGGGTTGGGTGACTGAGGCGGAAGCGGAAGAAAGATTAAAAGAGAGCCCGGAACGGCGTTTGAAAGACCCTTTTATACAAATAAAAAGCCAATCCACAAACCAGATGTTCCGGCTTTTCATTCGGCAAGGCCCGTTGCTGGACAATCCACAACCTGGATATTTCAGTGCCTACGGATTAAGCCATCAGGCAACTATCCCCTGGTTTTAACCCTTTTTTTAGCTACCTTGATAAGCCATTGATTTTAAATCTATTTATTTTTATGGCTTAACAAAAGGTTATCCTGTCTAAAAAAGCTGATATTCTTTAAAAATTAGATAGTTATCATTAATTTTAAACT # Right flank : ACTTATTATTATGCACAATGGGCGGTCATTAAACATCCATATTTAATTCCAAGGAGAAGTCTCAATGCAAAAGGTGCTCTTTTCCTTGCCCCGTGACTTGGTGGCGCGAATGCGGGCCAGCATCCCGCCGAAACAGCGCAGCCAGGTGATCGATGGCCTCCTGGAGCAGGAGCTTGAAAAGCGGGAGCAGGCCCTTTATCAATGCGCCCTGGAAGTGGAAGCGGACGATGCCCTGGGGGAAGAAATGAAAGACTGGGACATCACCGTGGGCGATGGCCTCAACCATGACTCGGGGTGAGGTGTACTGGGTTAATCTTGATCCCACGCAAGGATCGGAGATCCGCAAGCGCCGCCCCTGCGTCTTGGTGGGGGCCTCGCTCAGCCCAACGACGGTAGAACTATATCCACGCTTCTTCTGTTGTAATCCGTAACGCTACGCGATACATTGGCCAATGATTATCGGATTTCGGCACAAAGGGCTTGAAGACTTTTACAGGACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //