Array 1 5094-4401 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQTT01000035.1 Staphylococcus pseudintermedius strain ST749 AAH61_contig_35, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      5093	    36	 100.0	    29	....................................	TTCTTGAAAGCTATTGAGCCATACGTTAC 	
      5028	    36	 100.0	    29	....................................	AGAGGTGGTAAATTGATTAAGTATCTAGC 	
      4963	    36	 100.0	    30	....................................	CAATTAGTGGTCGAGAACTTCATCAAGCAT	
      4897	    36	 100.0	    30	....................................	GATTATGTTATTTTAGAGTAAATGAACATG	
      4831	    36	 100.0	    29	....................................	AAACCAGCCGAACCTTTTCGTACCCAATT 	
      4766	    36	 100.0	    30	....................................	TTAATTAACGGTCGTTCACAAACTTTGGTC	
      4700	    36	  97.2	    29	.T..................................	ACGTGCTTTGAATACTTCTATGGGTAAAT 	
      4635	    36	  97.2	    30	.T..................................	CTAAACGATGACATGACTATGACATTAATC	
      4569	    36	  97.2	    30	.T..................................	TTCAATGGGTGTCTGAAGGCTTTAATCATA	
      4503	    36	  97.2	    30	.T..................................	GAATGGATTAATCCGCAAGCAGTGGACGCA	
      4437	    35	  83.3	     0	.T.......T................-.CA.C....	|                             	CT [4404]
==========	======	======	======	====================================	==============================	==================
        11	    36	  97.5	    30	GCTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTCAATGTTTTTGGTTTTGAG
# Right flank :  CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC

# Questionable array : NO	 Score: 6.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:73.53%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,-0.20] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.91   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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