Array 1 32407-35216 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDR01000021.1 Enterococcus nangangensis strain 94-2 contig21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 32407 33 100.0 34 ................................. TTTAGCAGTGGTGCCAGTGATATCCAAATTTTCT 32474 33 100.0 35 ................................. ATATCTACCAACAGATTGTTTCGTTGTTTCTAGTT 32542 33 100.0 35 ................................. ATCATCCAAATCCACCATTTGTTTGCGATAGTCGT 32610 33 100.0 34 ................................. AAATCAATATATTTGGAAAATGTTATTGCTTTTT 32677 33 100.0 33 ................................. TTTATCTATCAGCTTTTTAGTGTATTTAGGGAA 32743 33 100.0 35 ................................. CACTCCAGCGAATGGAATTGGTGTTTGTCCAGATA 32811 33 100.0 34 ................................. CATTTCTGGCGTATCTAAATAAATCATTGTTGCA 32878 33 100.0 35 ................................. TGAACAGCTGGCACAATTGCCGAAACAAAAGTTTG 32946 33 100.0 36 ................................. TTGGATGCGGTAGCGACTGCTGGAACAATCGGCAAG 33015 33 100.0 33 ................................. CATAACAAAAAAATAAATTGGAGGCTTTTAAAA 33081 33 100.0 35 ................................. CCGAATGGGTCTGATTGCCCTTGTGAGCCGTTTTT 33149 33 100.0 32 ................................. TTTTTATTTGCTAATCAAGACCGTTTGATAAT 33214 33 100.0 37 ................................. ATACCAGTCAACTGACAAGTGCGGTACGCTTGGTGGC 33284 33 100.0 36 ................................. TAGTTAGAAATTTGATAACAGGAAAATTGCAAGAAA 33353 33 100.0 38 ................................. AAAACGCAATTAGACGAGAATTGCCCAAATATGGTCAC 33424 33 100.0 34 ................................. ATTCCGCTTCCTCCTTAAATTGAAGTCGATACTA 33491 33 100.0 34 ................................. TGCGATGGATTGGTAAAGCTAATCGTTTGCTCGG 33558 33 100.0 33 ................................. AAGATTTAAAGAAATGAACCACCAATTTAAAAA 33624 33 100.0 34 ................................. TTTTGTGTCCTCTGCTGTGTCTTTTACAACAAAG 33691 33 100.0 34 ................................. TTAGCATTGATACATTTGGGCACTTGGTAAGCAT 33758 33 100.0 36 ................................. CTAGCGGCTCGTCTGAAAATTCGTCATAGCTAAAAA 33827 33 100.0 34 ................................. AAGAATTACCAACAACTTTAAAAACAGAAATATC 33894 33 100.0 37 ................................. TTAGAAAACGCTTGGTATCTCGCAAAAAGCGAAGCTA 33964 33 100.0 36 ................................. ATATTGAACCTGGTGAAGAAACGTCAACAAGTGAAG 34033 33 100.0 36 ................................. ATGTCTTGCATAAATGATTTTATCGACTGGATAGTC 34102 33 100.0 36 ................................. TTTTTAGTAAGGAGGCATAACCATGGACGTACTACT 34171 33 100.0 34 ................................. CACGACACGCTAGATAGCATTGTGGATGCAATCG 34238 33 100.0 34 ................................. GCAACCAATAGTTGCACGAACCACGAACTATTTC 34305 33 100.0 35 ................................. TCGGACATCATCTACTATCTGAACAACGCTACTGG 34373 33 100.0 34 ................................. TGGTACGTATGGTAATGACAATCTTTATAAATTA 34440 33 100.0 35 ................................. AGCAGATTGAGTTTTTCGCTGATGAAAACCTAAAA 34508 33 100.0 34 ................................. AATATGTTTCGGGATTTCCTCATAATACTCTTGC 34575 33 100.0 36 ................................. CTATCCTTGGCGAAATAGCTTGCGGTGAGCCTATAC 34644 33 100.0 33 ................................. TAAGGGAACCCAATGTCATCATTTGTTCTTCCG 34710 33 100.0 37 ................................. TAACTTTTTTACCTTTTTCGGTGACGTTGACGTCGCT 34780 33 100.0 35 ................................. TGTTGATACATAGTGTGCAAACCCAAAGTAGTCAA 34848 33 100.0 36 ................................. ACGAATAATTGCCGGCACACTTTCAATGGTGCGCTT 34917 33 100.0 34 ................................. AAGATGTATTAGATATTAATTTTACGGAAAAGAC 34984 33 100.0 33 ................................. TGGAATGACAATCCAACGTGCGTTATCATTACC 35050 33 100.0 33 ................................. TTGGGAGCGTGGGGCTAATAAACCGTTAATGGA 35116 33 100.0 35 ................................. ACTACCAGCTTCCCCCACACCGTGCAATCCACCAT 35184 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 42 33 100.0 35 GTCGCACCTCGTATGAGGTGCGTGGATTGAAAT # Left flank : AGCGTTATATGTAAATGAAAAAACAGGCTTTCGTTCTTATTTTTTGAGTTTTGCTAGTGGTAGTCGCTTGGAGTTAACTAATAAAAAATTTCTCTTGGAACGTGCAGTGGACGCGGTGGGTTATTCCCACTTGGCTATTTCTGTAGGGACGAAAGAAGATGTAGATAGCTTTGTGGCAAAAGTACTCGCAGATGGTTTTCCGTTATTGAATGGACCGCGAACTACTGGTGATGGTTACTATGAAGCTGTTATTCAAGATCCAGAAGGAAATTTATTGGAAATTACGACAGATTGAAATATGTAGGTGTAAAAATGATCTTTAAGCGTTATATTTATTTTAGAGGTGCGAGTGTCAGGTAAACAGTTATTGACTAGTAGATTCGCACCAAAATTTTGGCTAGATTATAAGCATTTAGCAGTAAAATTTAGTGTTTTATCATACCAGTGCTATATTTCTCGTACTTTTTTGTGAAATCAACTTATTTTGGATAGATTTCACG # Right flank : TTTAATCTCGGCTTTTTGTTAGTCCGTTGCTGGCTGGTTTTAAGTCAATATTTTGGACACATTTTTATAGACTTTTTTGTTCAATCGCCACAAAGGCTCGCCTCCTTCTAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGTATGAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2648-315 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDR01000030.1 Enterococcus nangangensis strain 94-2 contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2647 33 100.0 36 ................................. TTAGATGGAAATTATAAAAATGACGAACGTAAAGAC 2578 33 100.0 34 ................................. TGTGTCACCACCCATTGATTGCAAGAGTGATGCG 2511 33 100.0 35 ................................. CATTTCAGCCACTCCAACACGACCTGCTGATCGTG 2443 33 100.0 34 ................................. AAGCACTGTCACCTCAATTTCTGTCCGTGGGTTG 2376 33 100.0 35 ................................. TGAAAACAATAAAATTAATTTGACAGATACAATCT 2308 33 100.0 35 ................................. TCGGATGTCATGACCAATGAATGCTTCCAATTGCT 2240 33 100.0 35 ................................. AGCTTCTTCCCGCTTGCAAGCCCGCCATAAACACC 2172 33 100.0 34 ................................. TTCTGATGATGATATTAAAAAATTAACTGAAGCT 2105 33 100.0 36 ................................. TTAGAGCCACAAGGATTTATCTCTTGTTGTGTATAG 2036 33 100.0 35 ................................. ATCTTGCGTAGATAAAGCATCACGTTTCAAGCGTA 1968 33 100.0 34 ................................. AGAAAAATCCTAAAGTGTATGAAATTTTAGCAAA 1901 33 100.0 34 ................................. ATGACTATTTACCATTAGATTGTGCATACGATAC 1834 33 100.0 34 ................................. AAATACTTTAGACAATCTAATCATGTCTGCGAAA 1767 33 100.0 35 ................................. CAAGCATTCAAACTCTAGCGATTTATCCATTGCCC 1699 33 100.0 34 ................................. TGAATCTTTGATAAATAACCCCCCACCTGGACTT 1632 33 100.0 34 ................................. TTGTAGGAGGTGATAATAAATGGAGTTAAAAGAC 1565 33 100.0 34 ................................. ACTGTAATCATTCATGGCTATTCACCATTAAGTT 1498 33 100.0 34 ................................. AAAGTAGGCGACAAATTAGACCGTGAGCTTGAGT 1431 33 100.0 35 ................................. TTCTCGGGTGGGGGGGATATTTTATAAAACGCATC 1363 33 100.0 33 ................................. GCCGACACAATCCCAATGTAGCCATTATCCGCA 1297 33 100.0 36 ................................. GGGGTCAATAAACCAATCCTCGAAAGGAAGATTGGT 1228 33 100.0 34 ................................. CACACGCCATTTTTATCCTTTTTCGGCTCGGCCA 1161 33 100.0 38 ................................. ATACTATTTAGCCGAAACAGAAACACAACTCATTTGAG 1090 33 100.0 34 ................................. TTTACTGGTTATTTTGACAGCTTTAAAACGTCAT 1023 33 100.0 34 ................................. TCAAATTTTTAAGATTGACACTGTCAATAAATTT 956 33 100.0 36 ................................. AAGATTAACAGCGAAACCAATGAGTGAAGAAATTGC 887 33 100.0 36 ................................. AAACTTGAGCTTGTCAAATTTTTCCCGTAGTTTTGC 818 33 100.0 34 ................................. GCTATTAACAAAAAACTCCAGATTGCCATTAGCG 751 33 100.0 33 ................................. CCAAGGACAATCGTCAACCGCAGCGACTGCGTT 685 33 100.0 36 ................................. AGAAAAAGAAGAAGCTAAAAACTGTCAAACCAAATT 616 33 100.0 36 ................................. CATGGGGGATGAACTAATGGCTAACGAATTAACTAC 547 33 100.0 33 ................................. CGCAACCACTAAACAAAAAGAAAGGAGAAAAAT 481 33 100.0 34 ................................. ATAACTGCATGGACTGTCTCGTGTCCTATGACTC 414 33 97.0 34 ...........T..................... TCCCCCGGCAACTCTTTTACAAGCGTCCCATCAG 347 33 97.0 0 ...........T..................... | ========== ====== ====== ====== ================================= ====================================== ================== 35 33 99.8 35 GTCGCACCTCGCATGAGGTGCGTGGATTGAAAT # Left flank : TCGTTTATCCAAGTGGTGTGCCTGAAGATGAAGAGGTCGAATTGCAAGCTTACGCGTACACTGAAAACGAAGATGGCTCTGAAGGCGCTTTGGAAGAAATTACCACTGACGCTGAATGGGACATGATTGAAGAAGTCTTCAATACGTTTATGTCCGACGAAGACGCAGAATAATTTTAAAAATAAAGCTGAACTTTCATTGGTGGAAGTTCGGCTTTTTTGATAAGACATGAGTACCTTCACGAAAAAAATGTTGTCCCATTGTGGGCACAAACTACCGACGATTGCAAAAAGTTAAGAAAGATAAACGTTAAGCTATATGCTAAAAGTTATATTTTTTTGACGGTGCGAATATGTGGTGGACAGCTATTTTCTAATAGATTCGCACTAAATTTTAAAGGATTAGCAGGTATTTTTATTGTAAAAATTAGCGCTTTATTAAATGTGTCCCATATTTACTATTTTTTTTGTGAAATCAGCGAATTTTGTCTAGATTTCACG # Right flank : TCAAAGTCTTTGTGATGGGCAAGTTATTGAAAGAAATTTTTGTTACGCTTTAGCATGGGTAGGGGCATCTGAATTAAAGCTAGATACTAATGTTCAACAGTGACTCACTCTATTCGATTACTCCTTATATTAGGTACAGACAATCTCCCGCTATATTCAAGGTTGGCTCGCTAACAAAGTAATTTAAATGTAATCCATCTGAAATTGTCAGAAGTGCAAAATTTGTACTTCTTTTTTTAAGTCAAGTCCATAATCCTGTGTAAAAGTTTTGATACAATGCTGACTCTGAAATAGATGGTGAGCTTGTAATAGTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCATGAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 24568-24402 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDR01000030.1 Enterococcus nangangensis strain 94-2 contig30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 24567 33 100.0 34 ................................. TAGGCTTAAGAGTTTAGAGAGTAGTCGTGATTGG 24500 33 100.0 33 ................................. CGAACGACGTCGGGAGGTTTTCTTGCGTTCTGG 24434 33 81.8 0 ...........C...............CTTG.A | ========== ====== ====== ====== ================================= ================================== ================== 3 33 93.9 34 GTCGCACCTCGTATGAGGTGCGTGGATTGAAAT # Left flank : CTATAAGTATTTGCCATTTTACACAACCCTTTCATAAAGCAGTTTAATAACTCTACGAAAATGTGTCTACTAAATTAGCCTAACACCAGTGCGTGGATTGAAATTTTTTGACTGACACCGTTTGATTTTGCCGTATTT # Right flank : TTTACAATTTAAGTGCAACACCTAAAAATGACTCATAACCGATTTCCAACTAGAATATGTTTGTCGAAGAACATTATCAGGAGGAATTCAGTTATGAGCCACTATACACATCTTACCATATTCGAGAGAGCGCGGATCTTTCTACTCCATGAAAAAGGCTATTCTCTCAGAAAGATTGCTTCAGATATCCATCGGAGCCCCGCAACGGTCTCGCGTGAACTAAATAGAAACAGCGAAGAAAAGTACTCACCTTCTCAAGCTAATCGGAAGTACGCAACACGTAGGAAGAATTGTGGACGACGTAAAATTTTAAATAATCCTCGAGTTTGGGCGATTGTTCGCCGATTAATTTAATGGTCCCCAGAAGAAATTTCTAATCGATTAGCTTATGAACAAGCCGATTTTCAGATTAGCTTTGTGACGATTTATCGCGCAATTTACGATGGAACATTTGAACTAAGAGGTTGTGCCAGAAGTGTTTAACTTCAAGAAATAAGACG # Questionable array : NO Score: 8.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGTATGAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.30,-14.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 68750-67639 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDR01000004.1 Enterococcus nangangensis strain 94-2 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 68749 33 90.9 35 CA.A............................. TTTTCAGGGAGGGTTTAAAAATAAATATAAAGTAT 68681 33 100.0 37 ................................. ACTAAAAAGGAAATCAAAGCCAAAGGCGAGCGTTACT 68611 33 100.0 36 ................................. TAAAAAAGTAGAAAAATTTAAGCAAAGCGTGAACAC 68542 33 100.0 34 ................................. CACGTAATCATTGTTAAAGTCTTGCATTGCTTTT 68475 33 100.0 34 ................................. GTGCCCGTCGGACTGGTGTCGCTGTATTCGGCCC 68408 33 100.0 35 ................................. ATTTTGCTTAAAAAATCGTAGTTGTCAGCATTAAG 68340 33 100.0 34 ................................. AATATCAATAAGTATTTCTTCTGCTTTCGTCATT 68273 33 100.0 34 ................................. AACCACTCTTTATTCTTCATTCCGCTTCCTCCTT 68206 33 100.0 33 ................................. ACTTCCTTGAGATTTATGAACAGTTAAGCCATA 68140 33 100.0 33 ................................. CATGCTACAAGCCACATCAATTATGGCTCGTTC 68074 33 100.0 34 ................................. AAAACCTTTCTAGCGTAATCCACACGTTGACTAA 68007 33 100.0 33 ................................. AACATCATAATTTTGCAGCTTAAAATAATTAGA 67941 33 100.0 34 ................................. CAATCAGATTGTTCTCATCCTCCAGGAACTCCTC 67874 33 100.0 34 ................................. AAAAGTGATTAATCTCATTGGCTCATTGGTTCCT 67807 33 100.0 35 ................................. CAAGATTACAAATAAGATATACACGCACGTTACAA 67739 33 100.0 35 ................................. TGATGAAATTGAGGAGCTGGAGCAACAGAATGAAA 67671 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 17 33 99.5 34 GTCGCACCTCGCATGAGGTGCGTGGATTGAAAT # Left flank : AGCAATTCAATAAAATTCAAAAGAAGATTGCGACCTTAGATAAGAAAAAAAATAATCTCGTTGATATGAGATTAGATGAAAAAATCGACAAAGAAACTTATGAGATGAAATTCACTGAAATAACCTTGAAGCTAGATGAATTGTTAAAGGAACGTACATCTTTAGAAAATTCCTTGGATAACGAATATACCATGAAAAAGCGATTGGCTGAATTTAGAAAGACGTTGCAAAATAACCAAGTCCTTGATGAATTTGACCGCTATGTTTTTGAAAGTATTGTCGAAAAAGTAATTGTGGGTGGTGTCGAAGAAGATGGCACGATTGACCCATACAAACTCGTCTTCATATACAAAACAGGATTGACAGACAGCCAAAATGGCGGTAAGTTTAAACCGAAACGAAAGAATGCGAAGAAGTCAAATGACATTGTTACAATGAGTACCGATTTGCGTTCACAAGCAAGTGACGAGGATAATAAACTGTGTTCACATGCTAGTAAC # Right flank : CAGATGTGCAATATTTTCACTTCTGGGGATTTTGTGTCGCACCTCATATAGGCTACCCCAAAAATTATAAAAAATGCAGTACATTTTTCTACATTTATTTTAATGGGCATTTTAAAAGATTGAGTTGAGCAAGTTTCTCTTCTAAAAAAAGAACGATGCAAAATCTCGCAAAAGATTTTGCATCGTTCTTTCTTTTACTGGAAGTCGTGCAATCTTTTCCCCATTCTTCCGCTACGCGTCTTTAAAGCTCATATGCGTGGGTAAAAAAATCAGCTGTATCAGTCATCAAATCTGGTTCGACTAAGTGGTCTTGGCCTTCGCCAGTAACAAAAATTGTGCGCTTAGCGTAAGGTTCATTCTTAATCGCTTGATAGAAGCTAGCTACATCGATATAGGGAATTCGTTGGTCTTTGGTGCCATGCCAAAGGTAGAAGGGGCGACCGTTAATTTTTTCTGGTGCCATACTTAAGTCGTAATATTTAAGCCAACTGACTAATTGC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCATGAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 95066-94559 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJDR01000004.1 Enterococcus nangangensis strain 94-2 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 95065 33 100.0 36 ................................. CCCGGGTTGAGTGGTTGGTGAATCTGTCACCCAGTC 94996 33 100.0 35 ................................. CGTCCACGTTGTGCCGATTAAAGTATAGATGCCAA 94928 33 100.0 33 ................................. TCCTGCCATATAATTTCCTCCTAGCTATAGTAA 94862 33 100.0 38 ................................. TTAACGCCTTCATAAGCAGATTTCAACCCGCCAAGGAA 94791 33 100.0 34 ................................. AAAGTCATCTATTCCCCTTTCCTGTTTTCAAAAT 94724 33 100.0 33 ................................. AAAAATAGTGTGAAAGGTACGACAGTTTGAGAA 94658 33 100.0 34 ................................. CGTTAAATCAATATCTAGCGCTTCCGCTATCCGT 94591 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 8 33 100.0 35 GTCGCACCTCGCATGAGGTGCGTGGATTGAAAT # Left flank : AGCGTTATATGTAAATGAAAAAACAGGCTTTCGTTCTTATTTTTTGAGCTTTGCTAGTGGTAGTCACTTGGAGTTAACTAACAAAAAGTTTCTCTTGGAACGTGCAGTGGACGCGGTGGGTTATTCCCACTTGGCTATTTCTGTAGGGACGAAAGAAGATGTAGATAGCTTTGTGACAAAAGTACTCGCAGATGGTTTTCCGTTATTGAATGGACCGCGAACTACTGGTGATGGTTACTATGAAGCTGTTATTCAAGATCCGGAAGGAAATTTATTGGAAATTACGACAGATTGAAATATGTAGGTGTAAAAATGATCTTTAAGCGTTATATTTATTTTAGAGGTGCGAGTGTCAGGTAAACAATTATTGACTAGTAGATTCGCACCAAAATTTTGGCTAGATTATAAGCATTTAGCAGTAAAATTTAGTATTTTATCATACCAGTGCTATATTTCTCGTACTTTTTTGTGAAATCAACTTATTTTGGATAGATTTCACG # Right flank : ATTTTTGTTTCCTCCTTTGATTTGTTTACCTCTTCGTCGCATGTGGAGACAATAGTGTTGCTACAACGACACTAAGGCTGGAAATCCTTAATTTTAGGCAGTTTTACAAGCATATCGTTTTCACTGGCGAGGGGGATAAAGTACGAAATAAGGAGATTCGAGACTACATCAATGTGTCAGTAGTCATAGACCTAGTAAGTGGGAACACAACAAATGAAAACTAAATATTAGAGTAGATAGTATCTATTTACTCGTTAGAATAAGGCGTTTCTATAAAAGGAAGCGTCTTTTTTTGTACCCAAAATTAAAAGAGAAAAACAATGAAAGGAATGAGTATGAAAACAAAATCAAAAATACCACAAAAAGTATTGAGTTTCGTTATGGTCTTAGTGACACTATGCGGAACATTATTCTCAAATGCGATACCTGTTCATGCCAGTTCATTAAATTTAGATGAACCAACGCAATACTATTATACAGGTGTCAGCCCTAACACTGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCGCATGAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //