Array 1 107869-106392 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVF01000007.1 Salmonella enterica strain BCW_3047 NODE_7_length_213887_cov_2.99329, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107868 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107807 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107745 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107684 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107623 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107562 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107501 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107440 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107379 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107318 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107257 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107196 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107135 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107073 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106970 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106909 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106848 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106787 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106726 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106665 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106604 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106543 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106482 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106421 29 96.6 0 A............................ | A [106394] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125555-124001 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXVF01000007.1 Salmonella enterica strain BCW_3047 NODE_7_length_213887_cov_2.99329, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125554 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125493 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125432 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125371 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125310 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125249 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125188 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125127 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125066 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125005 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124944 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124883 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124822 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124761 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124700 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124639 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124578 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124516 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124455 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124394 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124333 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124272 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124211 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124150 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124089 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124028 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //